All software
DeepRank GNN
DeepRank-GNN is the graph neural network of our DeepRank package. DeepRank GNN allows to train graph neural networks to classify protein-protein interface
- Machine learning
- Protein-Protein Interaction
- Python
Scalasca
The Scalasca Trace Tools support performance optimization of parallel programs with a collection of highly scalable trace-based tools for in-depth analyses of concurrent behavior, in particular with respect to communication and synchronization, and offers guidance in exploring their causes.
- hpc
- Information
- Performance Analysis
- + 3
pycomlink
A python toolbox for deriving rainfall information from commercial microwave link (CML) data.
- precipitation estimation
- python
- rainfall
- + 2
- Python
Vitruvius
View-based System Development on Consistent Models
- Consistency
- Model-driven development
- Model transformations
- + 1
- Java
GOLEM
GOLEM is a modelling platform for thermal-hydraulic-mechanical and non-reactive chemical processes in fractured and faulted porous media, based on the MOOSE framework
- Earth & Environment
- Multiphysics of porous fractured rocks
- reservoir behaviour and induced seismicity
- + 1
- C++
- SWIG
- Assembly
- + 5
GAIA
A framework to study the thermo-chemical evolution of rocky and icy bodies (planets, moons, and planetoids) on a global scale in the solar system and beyond.
- CFD
- Computational Fluid Dynamics
- Earth & Environment
- + 4
rGREAT
GREAT is a type of functional enrichment analysis directly performed on genomic regions. This package implements the GREAT algorithm, also it supports directly interacting with the GREAT web service (the online GREAT analysis). Both analysis can be viewed by a Shiny application.
- Data analysis
- Data Visualization
- FAIR Data
- + 3
- R
- C++
Allpix Squared
Allpix Squared is a semiconductor detector simulation framework. The goal of the framework is to provide a complete and easy-to-use package for end-to-end simulations of semiconductor detector performance from incident ionizing radiation until the digitization of hits in the detector chip.
- Drift-Diffusion
- Geant4
- Matter
- + 6
- C++
- CMake
- C
- + 2
multiGSEA
The multiGSEA R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers. The enrichment is calculated for each omics layer separately and aggregated p-values are calculated afterwards to derive a composite multi-omics pathway enrichment.
- Data analysis
- Enrichment Analysis
- FAIR Data
- + 2
- R
- TeX
RiboDetector
RiboDetector is designed to rapidly and accurately detect rRNA sequences from metagenomic, metatranscriptomic, and ncRNA sequencing data. It has been optimized for use with both CPUs and GPUs. It outperforms existing software by delivering 10-50x faster runtime and ~10x fewer false classifications.
- Data analysis
- FAIR Data
- Genomics
- + 3
- Python
HEAST
Hybrid Electric Aircraft Sizing Tool (HEAST)
- Conceptual aircraft design
- Distributed propulsion
- Hybrid electric propulsion
- + 1
- Markdown
- Matlab
- Other
ESMValCore
ESMValTool Core: core functionalities and driver for ESMValTool, a community diagnostic and performance metrics tool for routine evaluation of Earth System Models in CMIP.
- Big data
- Optimized data handling
- Visualization
- + 1
- Dockerfile
- HTML
- JavaScript
- + 4