All software

ArrayAnalysis

ArrayAnalysis provides a user-friendly solution for transcriptomic data analysis. It allows researchers, regardless of their bioinformatics expertise, to efficiently analyse, explore, and interpret RNA sequencing and microarray datasets.

Materials Learning Algorithms

MALA (Materials Learning Algorithms) is a data-driven framework to accelerate electronic structure calculations based on machine learning. Its purpose is to construct neural-network surrogate models for bypassing computationally expensive steps in state-of-the-art density functional simulations.

FAIR Data Point

RESTful web service that enables data owners to expose their data sets using rich machine-readable metadata.

rGREAT

GREAT is a type of functional enrichment analysis directly performed on genomic regions. This package implements the GREAT algorithm, also it supports directly interacting with the GREAT web service (the online GREAT analysis). Both analysis can be viewed by a Shiny application.

ESMValCore

matchms

Python library for fuzzy comparison of mass spectrum data and other Python objects

RiboDetector

RiboDetector is designed to rapidly and accurately detect rRNA sequences from metagenomic, metatranscriptomic, and ncRNA sequencing data. It has been optimized for use with both CPUs and GPUs. It outperforms existing software by delivering 10-50x faster runtime and ~10x fewer false classifications.

Scholia

Graphical User Interface around Wikidata that uses SPARQL to collect data

hybridMT

The hybridMT is MATLAB/shell environment software package for the seismic moment tensor inversion in time domain. The package allows to estimate fault plane parameters and the balance between volumetric and non-volumetric strain in the seismic source using different decomposition schemes.

splithalfr

Estimates split-half reliabilities for scoring algorithms of cognitive tasks and questionnaires.

dataquieR

dataquieR is an R package designed to conduct automated and standardized data quality assessments. It can be applied to all sorts of tabular data. Spreadsheet-type metadata can be used to specify descriptions, expectations, and requirements about the data.

Paired omics data platform

If you do metabolomics experiments with mass spectra and have sequenced the genomes of the samples, then the platform can help you link them.