All software
CellDetection
An open-source Python package, offering advanced AI methods for the identification and segmentation of biomedical objects, such as cells, in image data. Includes trained models that work out-of-the-box for a wide range of use cases.
- cell counting
- cell detection
- cell segmentation
- + 9
- Python
- Dockerfile
GSTools
GSTools is a Python-based software suite for solving a wide range of geostatistical problems. GSTools provides methods for generating different classes of correlated random fields; it can perform kriging, variogram estimation and much more.
- covariance-model
- geospatial
- geostatistics
- + 7
- Python
ARX - Open Source Data Anonymization Software
ARX is an open-source tool for anonymizing sensitive personal data. It offers many privacy/risk models, transformation methods, and utility analyses. Used in research, clinical trials, training, and big-data platforms. Scales to large datasets and includes an intuitive cross-platform GUI.
- anonymization
- de-identification
- privacy
- Java
- HTML
- Shell
JURASSIC
The Juelich Rapid Spectral Simulation Code (JURASSIC) is an open source, high performance infrared radiative transfer and retrieval model for atmospheric remote sensing applications.
- Atmospheric science
- Climate
- Earth & Environment
- + 7
- C
- Python
- Shell
- + 2
OpenChrom
OpenChrom is a vendor independent open source software for chromatography, spectrometry and spectroscopy.
- chromatography
- mass spectrometry
- CSS
- HTML
- Java
- + 1
Spex
Spex is a computer code based on many-body perturbation theory and is part of the FLEUR code family. It uses the full-potential linearized augmented plane-wave method (FLAPW), which provides an accurate basis set for all kinds of materials including transition metals, oxides, and f-electron systems.
SAGECal
Fast, memory efficient and GPU accelerated radio interferometric calibration program
- Big data
- GPU
- High performance computing
- C
- C++
- CMake
- + 5
SpatialData framework
SpatialData is an open and interoperable data framework for ingesting, representing, processing and visualizing spatial omics datasets.
- Data Visualization
- FAIR Data
- Multi omics
- + 3
- Python
- Dockerfile
FlexiGIS
FlexiGIS is a software tool for processing and analysing GIS-based data to design urban energy systems. Models developed with FlexiGIS enable the exploration and assessment of flexibility options in cities.
- Data analysis
- Energy
- Energy planning
- + 4
- Python
- Makefile
MS2DeepScore
Deep learning based similarity measure of mass spectrometry data.
- Jupyter Notebook
- Python
NNPDF
Fitting proton substructure to observation data using neural networks
- Machine learning
- C
- CSS
- HTML
- + 5
OpenLB
OpenLB is a C++ package for the implementation of lattice Boltzmann methods (LBM) to address a vast range of transport problems, e.g. in computational fluid dynamics. The modular open source code enables fast implementation of academic test problems and advanced engineering applications.
- Computational Fluid Dynamics
- High Performance Computation
- Lattice Boltzmann Methods
- + 4
- C
- C++
- Makefile
- + 2