All software
LiberTEM
LiberTEM is an open source platform for high-throughput distributed processing of large-scale binary data sets and live data streams using a stream-based programming model. The current focus is pixelated scanning transmission electron microscopy (4DSTEM) and scanning electron beam diffraction data.
- 4D STEM
- electron microscopy
- high-throughput
- + 3
- Python
- TypeScript
- JavaScript
- + 6
MUSCLE3
MUSCLE3 is a coupling library for building multiscale simulations out of single-scale models.
- High performance computing
- Multi-scale & multi model simulations
- (C)
- (C++)
- (Dockerfile)
- + 4
OMUSE
A Python environment to interface and couple oceanographic and other earth system model codes.
- High performance computing
- Multi-scale & multi model simulations
- (Batchfile)
- (C)
- (C++)
- + 10
Code underlying the publication: Forecasting estuarine salt intrusion in the Rhine-Meuse delta using an LSTM model
Code underlying the publication: Forecasting estuarine salt intrusion in the Rhine-Meuse delta using an LSTM model
- chloride
- Delta
- estuary
- + 7
Data underlying the publication/thesis chapter: FlexConv: Continuous Kernel Convolutions with Differentiable Kernel Sizes
Data underlying the publication/thesis chapter: FlexConv: Continuous Kernel Convolutions with Differentiable Kernel Sizes
- computer vision
- Convolutional Neural Network
- kernel size
- + 2
- ("Jupyter Notebook")
- (Markdown)
- (Other)
- + 2
APE
A CLI, Java API and RESTful API for the automated generation of computational pipelines (scientific workflows) from large collections of computational tools.
- Java
- Program synthesis
- Workflow technologies
- (ANTLR)
- ("Common Workflow Language")
- (Java)
DeepRank2
DeepRank2 is an open-source deep learning framework for data mining of protein-protein interfaces or single-residue missense variants. This package is an improved and unified version of three previously developed packages: DeepRank, DeepRank-GNN and DeepRank-Mut.
- Cancer vaccine
- Convolutional Neural Network
- Deep Learning Framework
- + 5
- (Dockerfile)
- ("Jupyter Notebook")
- (Python)
- + 1
laserchicken
Toolkit for preprocessing and feature calculation of point clouds created using airborne laser scanning
- Big data
- Machine learning
- ("Jupyter Notebook")
- (Python)
LinkAhead
Open Source Research Data Management Software
- Data
- Electronic Lab Notebook
- ETL
- + 9
- (ANTLR)
- (C++)
- (CSS)
- + 9
AWI GPT
Four tools - ClimSight, pangaeaGPT, AWI_chatbot, and CMIP6 search - use LLMs to enhance research and operations. pangaeaGPT aids dataset exploration, ClimSight provides location-specific climate insights, AWI_chatbot streamlines internal tasks at AWI, and CMIP6 search improves access to CMIP6 data.
- AWI Chatbot
- Climate
- ClimSight
- + 6
ClimSight
ClimSight is a tool designed to make localized climate information both accessible and actionable. By integrating large language models (LLMs) with geographical and climate data, ClimSight provides users with tailored, location-specific insights essential for a variety of applications.
- Climate
- climate modelling
- ClimSight
- + 1
- Python
- TypeScript
- CSS
- + 3
Representation of Protein Entities (RoPE)
RoPE clusters related protein structures on torsion angles to derive an interpretable, mathematical conformational space of that protein, revealing relevant protein dynamics.
- C++
- Data analysis
- Data Visualization
- + 4
- C++
- C
- GLSL
- + 4