All software
Oligo Designer Toolsuite
Oligo Designer Toolsuite is a collection of modules that provides all basic functionalities for custom oligo design pipelines as well as advanced experiment-specific functionalities like machine learning models for oligo specificity prediction within a flexible Python framework.
- bioinformatics
- oligonucleotide design
- Probe Design
- + 1
- Python
- Jupyter Notebook
SaQC
A consistent, extensible, easy-to-use tool/framework for reproducible quality control of time series data.
- Data analysis
- Earth & Environment
- Quality control
- + 1
- Python
Spin-Dependent 5th Force Limits
This is an open research software and data platform for compiling, standardizing, and visualizing constraints on spin-dependent exotic interactions beyond the Standard Model. It provides a unified, reusable, and citable framework for comparing results across experiments and parameter spaces.
- Beyond Standard Model physics
- Data compilation
- FAIR Software
- + 4
- TeX
- Jupyter Notebook
- HTML
- + 4
venco.py
A tool to derive battery electric vehicle energy demands from given trip data. venco.py provides normalized, aggregated electric vehicle fleet demand profiles for two cases: Uncontrolled charging and a technical (mobility-constrained) potential for controlled charging including vehicle-to-grid.
- electricity
- electric vehicles
- Flexibility
- + 2
- Python
- BibTeX
argopy
Argopy is a python library dedicated to Argo data access, manipulation and visualisation for standard users as well as Argo experts.
- Data Analysis
- Data processing
- Earth and Environmental Sciences
- + 3
- (CSS)
- (Dockerfile)
- (Python)
- + 1
Cheetah
Fast and differentiable particle accelerator optics simulation for reinforcement learning and optimisation applications.
- Automatic Differentiation
- Differentiable Programming
- Differentiable Simulation
- + 7
- Python
- Jupyter Notebook
finite-strain-inverse-designed-spinodoids
Data and Code underlying publication: Experiment-informed finite-strain inverse design of spinodal metamaterials
- In situ characterization
- Inverse design
- Machine learning
- + 2
- (Matlab)
- (Other)
- (Python)
UltraMassExplorer (UME)
Natural organic matter is the most complex chemical mixture on our planet. UME is an open access, browser-based tool that allows efficient, interactive, transparent, and reproducible exploration and evaluation of ultrahigh resolution mass spectra of complex organic matter.
- analytical chemistry
- Carbon cycle
- Data analysis
- + 7
- R
- BibTeX
- CSS
spacemake
Processing and analysis of large-scale spatial transcriptomics data
- Pipeline
- snakemake
- Spatial transcriptomics
- Python
- Jupyter Notebook
- Shell
- + 3
Numerical and analytical model for Taylor flow in tubular CO2 electrolyser
Numerical and analytical model for Taylor flow in tubular CO2 electrolyser
- COMSOL
- gas-liquid Taylor flow
- MATLAB
- + 1
swyft
swyft is the official implementation of Truncated Marginal Neural Ratio Estimation, a hyper-efficient, simulation-based inference technique for complex data and expensive simulators.
- Bayesian Inference
- Data Analysis
- ("Jupyter Notebook")
- (Python)
eAC_charging_infra_optimization
Code underlying the publication: Optimizing the battery charging and swapping infrastructure for electric short-haul aircraft—The case of electric flight in Norway
- Battery swapping systems
- Commuter air transport
- Electric aviation
- + 3
- (Markdown)
- (Other)
- (Python)