All software
ProFASi
PROFASI (PROtein Folding and Aggregation SImulator) is a C++ package for HPC Monte Carlo simulations of protein folding and aggregation. It provides an all atom, implicit solvent force field, and a set of tools to perform Monte Carlo simulations. A plugin mechanism allows for user extensions.
- Monte Carlo
- Peptide Aggregation
- Protein folding
- + 2
- C++
- CMake
- Python
- + 1
protein-detective
Python package to detect proteins in EM density maps.
- (Python)
PSRDADA python
If you want to do astrophysics in python, this could come in handy. Connect to a radiotelescope and process data in real-time.
- (Cython)
- (Makefile)
- (Python)
Publex
A browser-based publishing software for XML-annotated dictionaries.
- Dictionaries
- digital publishing
- XML
Pundit
Web annotation made easy With Pundit Annotator you can highlight or comment on any text on the web. It is the perfect tool for your work, research, study. Pundit Annotator also helps you broaden your everyday reading on the web.
- text-annotation
- HTML
- JavaScript
- TypeScript
- + 3
Pure3D
A web platform for exploring 3D digital collections and editions in cultural heritage.
- (CSS)
- (HTML)
- (JavaScript)
- + 4
pyanno4RT
pyanno4rt is a Python package for conventional and outcome prediction model-based inverse photon and proton treatment plan optimization, including radiobiological and machine learning (ML) models for tumor control probability (TCP) and normal tissue complication probability (NTCP).
- Treatment Planning and dosimetry
- (Python)
pybacting
Python wrapper around Bacting.
- Biology
- Chemistry
- python
- (Just)
- (Python)
PyBeam-QA
A Python library for performing beam quality assurance tests in radiotherapy. The software is in an early stage of development.
- Quality Assurance
- (HTML)
- (JavaScript)
- (Python)
- + 1
PyCast S2S
PyCast S2S is a collection of tools for post-processing climate forecasts. It is tailored towards the integration in operational workflows, allowing for automated bias-correction and forecast evaluation. PyCast is written in Python and uses state-of-the-art libraries for data processing.
- Climate forecasting
- Earth & Environment
- open source
- + 1
- Jupyter Notebook
- Python
pyCERR
pyCERR provides convenient data structure for imaging metadata and their associations. Utilities are provided to to extract, transform, organize metadata and visualize results of image processing for image and dosimetry features, image processing for AI model training and inference.
- Treatment Planning and dosimetry
- ("Jupyter Notebook")
- (Python)
- (Shell)
pycmor
A Python package that simplifies the conversion of climate model output into CMOR-compliant formats, supporting CMIP6 and CMIP7 standards. Provides a modular, plugin-based pipeline for processing NetCDF data from diverse Earth system models.
- CF-conventions
- climate model output
- CMIP6
- + 7
- Python