All software
NPLinker Web Application
This is the NPLinker web application, developed with Plotly Dash. It enables interactive visualization of NPLinker predictions and is designed to be run locally or in a containerized environment.
- Data mining
- Genome
- Metabolome
- + 2
- CSS
- Dockerfile
- Mustache
- + 1
OCR-D
OCR-D's software is a modular collection developped to create comprehensive processes that typically involve recognition of full texts, letters and words. Techniques such as pre-processing, layout analysis and post-processing are applied. (Quotations from: https://ocr-d.de/en/about.html)
- OCR
- open source
- Text Recognition
- Makefile
- Shell
- Dockerfile
- + 1
powerfit
Rigid body fitting of atomic strucures in cryo-electron microscopy density maps
- cryo-electron microscopy
- macromolecular structure
- map fitting
- C
- Cuda
- Dockerfile
- + 3
dtscalibration
A Python package to load raw Distributed Temperature Sensing (DTS) files, perform a calibration, and plot the result.
- calibration
- DTS
- fiber optic
- + 1
- Jupyter Notebook
- Python
COMANDO
COMANDO is a next generation modeling framework for Component-Oriented Modeling and optimizAtion for Nonlinear Design and Operation of integrated energy systems.
- Energy
- ESD
- ESD - Topic 2
- Python
PanTools
PanTools is a pangenomic toolkit for comparative analysis of large number of genomes. It is developed in the Bioinformatics Group of Wageningen University, the Netherlands. Please cite the relevant publication(s) from the list of publications if you use PanTools in your research.
- Data Analysis
- Gene classification
- pangenomics
- Java
- Python
- Roff Manpage
- + 1
Code to paper: Review of image segmentation techniques for the layup defect detection in the Automated Fiber Placement process
Code to paper: Review of image segmentation techniques for the layup defect detection in the Automated Fiber Placement process
- dlr
- fiber placement
- inspection
Fastscape Toolbox
Fastscape is a set of open-source software components aimed at making landscape evolution models and topographic analysis algorithms readily accessible to a wide range of users.
- Earth & Environment
- Geomorphology
- landscape
- + 2
- Python
SpecHomo
SpecHomo is a Python package for spectral homogenization of multispectral satellite data, i.e., for the transformation of the spectral information of one sensor into the spectral domain of another one.
- Earth & Environment
- Remote sensing
- spectral homogenization
- Python
- Makefile
- Shell
cola
Subgroup classification is a basic task in genomic data analysis. The cola package provides a general framework for subgroup classification by consensus partitioning.
- Data analysis
- Data Visualization
- FAIR Data
- + 3
- R
- C++
KG-tool: Python package for accessing the Chemical Engineering Knowledge Graph (ChemEngKG)
KG-tool: Python package for accessing the Chemical Engineering Knowledge Graph (ChemEngKG)
- Artificial Intelligence
- chemical engineering
- chemical process development
- + 2
MEmilio
MEmilio implements various models for infectious disease dynamics, from compartmental to agent-based models. Through efficient implementation and parallelization, MEmilio brings cutting edge and compute intensive models to a large scale, enabling high-resolution spatiotemporal disease dynamics.
- Agent-based Model
- C++
- compartmental model
- + 12
- C++
- Python
- CMake
- + 3