All software
metadeconfoundR
Using non-parametric tests, naive associations between omics features and metadata in cross-sectional data-sets are detected. In a second step, confounding effects between metadata associated to the same omics feature are detected and labeled using nested post-hoc model comparison tests.
- R
MetaStore
MetaStore is a research data repository software for storing metadata documents and schemas. Quality and consistency are ensured by associating and validating each document against a schema. It supports JSON and XML.
- data managment
- FAIR Data
- metadata
- + 1
- Java
- JavaScript
- HTML
- + 3
Metasyn
Metasyn is a Python tool for synthetic data generation. It is geared towards use-cases where privacy is of the utmost importance. Metasyn emphasizes transparency and auditability of the outputs.
- disclosure
- generative models
- metadata
- + 3
- (Dockerfile)
- (Python)
methylKit
methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods and whole genome bisulfite sequencing.
- R
- C++
- TeX
Metrics Reloaded
The mission of Metrics Reloaded toolkit is to guide researchers in the selection of appropriate performance metrics for biomedical image analysis problems and to provide a comprehensive online resource for metric-related information and pitfalls.
- Algorithm Validation
- Problem-Aware Metric Selection
- Problem Fingerprint
Metriplane
Open-source Python software for workcell state observation, incident evidence, deterministic record/replay, and reproducible regression testing.
- ArUco
- benchmark evidence
- computer vision
- + 12
- (CSS)
- (Dockerfile)
- (HTML)
- + 3
mHM
The mesoscale Hydrologic Model (mHM) is a well established hydrological model used by the scientific community. It is under active development with dozens of contributors and has an open community always interested in discussions.
- Earth & Environment
- mesoscale hydrologic model
- mHM
- + 2
- AGS Script
- Fortran Free Form
- Python
- + 2
mibibio
Collection of microbial analysis workflows to investigate microbiological community structure, characteristics and their degradation potential.
mibiremo
MiBiReMo (Microbiome Bioremediation Reaction Module) is a Python interface to the PhreeqcRM library. The package is designed to be coupled with transport models to simulate reactive transport in porous media, with applications in environmental and geochemical engineering.
- (Makefile)
- (Python)
mibiscreen
Data handling and screening package of the Microbiome based remediation Prediction Tool
- Data Analysis
- Multi-scale & multi model simulations
- python
- ("Jupyter Notebook")
- (Python)
- (Shell)
mibitrans
A collection of analytical and semi-semianalytical solutions for hydrogeological transport phenomena
- Multi-scale & multi model simulations
- python
- (Python)
- (Shell)
micofam
MiCoFaM (Micromechanical Composite Fatigue Modeler) is a model generator for creating representative volume elements (RVEs) consisting of fibre, interface and matrix phases for a given fiber volume content with randomized fiber placements. The application is provided as an ABAQUS plug-in.
- Modeling
- python
- Simulation