All software
MatRad
Matrad is an open source software for radiation treatment planning of intensity-modulated photon, proton, and carbon ion therapy.
- Treatment Planning and dosimetry
- (C++)
- (MATLAB)
- (TeX)
μ-awk
This is a tiny Python implementation of a line processor with Awk-like semantics. You write a set of regex-based rules. The program loops through the lines of some input file, running the matching functions on lines that match.
- python
- Text analysis & natural language processing
- (Python)
mcodac
Calculation of pristine and damaged composite structures.
- Fortran
- python
- CMake
- Python
MCsquare
Fast Monte Carlo dose calculation algorithm for the simulation of PBS proton therapy.
- Treatment Planning and dosimetry
- (Batchfile)
- (C)
- (Makefile)
- + 1
mobile Drilling Information System (mDIS)
mDIS is a database management application for capturing and curating meta data on geological samples, drilling progress, and related datasets such as images or geophysical well logs. It is easily adaptable and ensures that all data is compiled and quality controlled in one place.
- data management
- drilling
- Earth & Environment
- + 1
- PHP
- Vue
- JavaScript
- + 2
me-compute
me-compute: a Python software to download events and data from FDSN web services and compute their energy magnitude (Me)
- energy magnitude
- FDSN
- seismic data
- + 1
- Python
- HTML
Medical Image Processing in Python
This lesson introduces some specifics of medical image processing with popular Python libraries such as SimpleITK, Pydicom and NiBabel. Reconstruction algorithms, image and DICOM anonymization, registration, segmentation, data augmentation and generative AI are covered.
- Image processing
- medical
- radiology
med-imagetools
Aims to provide transparent and reproducible medical image processing pipelines in Python. Focuses on subject-based machine learning and processing DICOMs into deep learning-ready format.
- Imaging and Image Processing
- (Dockerfile)
- ("Jupyter Notebook")
- (Python)
MemBrain v2
MemBrain v2 aims to facilitate the analysis of membranes in cryo-electron tomography data. It consists of the components membrain-seg for membrane segmentation, membrain-pick for membrane protein localization, and membrain-stats for the extraction of membrane-based metrics.
- Python
MemRBC
MemRBC is an R package for spectral modeling of red blood cell shapes in R. It is the result of open science research, demonstrating the idea of hi-level apps with metadata creation in a lightweight obejct oriented approach.
- cell shape
- Helfrich
- R
- + 5
- R
- JavaScript
- C++
- + 1
MERCY
The marine mercury cycling model MERCY v2.0 is a chemistry transport and bio-accumulation model for mercury (Hg). It implements all known processes for marine (pelagic and benthic) Hg cycling into a biogeochemical 3D ocean-ecosystem model. https://gmd.copernicus.org/preprints/gmd-2021-427/
- Bioaccumulation
- Chemistry Transport Modeling
- Earth & Environment
- + 6
Merkle-DAG-Matlab
Merkle-Directed Acyclic Graph (DAG) in MATLAB
- Cryptographic-hash-functions
- Graph-algorithms-and-data-sturcture
- matlab
- + 1
- MATLAB