All software
SampleDB
SampleDB is a web-based electronic lab notebook with a focus on sample and measurement metadata. With SampleDB, you can track each step in the sample lifecycle and its schema system allows you to define exactly what metadata should be stored for each process, from a simple check box to time series.
- Electronic Lab Notebook
- metadata
- Research Data Management
- Python
- HTML
- JavaScript
- + 3
Satsense
A Python library for land use classification based in satellite images.
- Image processing
- Machine learning
- ("Jupyter Notebook")
- (Python)
Scholy – Core
This project is part of Scholy, a linked open data platform for realizing directories of scholar.
- Grails
- RDF
- scholar directory
- + 3
Scholy – Core
This project is part of Scholy, a linked open data platform for realizing directories of scholar.
- Grails
- RDF
- Scholar Directory
- + 3
sci2grid
sci2grid is a software tool for extracting, filtering, and processing data to build open-source grid models. The main objective of sci2grid is to offer easily accessible and transparent models that support further applications in science, industry, and society.
- Data analysis
- Energy
- ESD
- + 4
Scifeon Lims, ELN and Workflow Automation
Scifeon is a modular lab informatics platform combining LIMS and ELN to streamline workflows, ensure compliance, and increase productivity—designed for biotech and regulated labs.
- auditory processing
- Big data
- bioinformatics
- + 14
scikit-talk
Scikit-talk is an open-source toolkit for processing collections of real-world conversational speech in Python. The toolkit aims to facilitate the exploration of large collections of transcriptions and annotations of conversational interaction.
- conversation
- language corpora
- turn-taking
- (Python)
- (Shell)
scPower
scPower is a statistical framework for design and power analysis of multi-sample single cell transcriptomics experiments. It enables users to identify the optimal experimental parameters for cell type specific inter-individual DE and eQTL analysis using single cell RNA-seq data given a fixed budget.
- Experimental design
- Health
- scRNA-seq
- + 1
- R
- HTML
- CSS
Scripto
Scripto is an extension for Omeka Classic and Omeka S, that opens up the possibilities of community-sourced transcription, translation, or description for digital humanities projects.
- crowdsourcing
- Transcription
- PHP
- Ruby
- JavaScript
- + 1
seahtrue
Seahtrue processes XF analyzer data on oxygen consumption and acidification from Agilent Wave .xlsx exports into tidy, nested tibbles, enabling reproducible analysis, preprocessing checks, advanced visualisation, and statistics for open metabolic research.
- bioconductor
- metabolism
- R
- + 2
- (R)
SeisComP
SeisComP is a widely distributed seismological software package for real-time monitoring of earthquakes and other seismic events and provides for data acquisition, processing, distribution and interactive analysis. It has been developed within the GEOFON Program by GFZ and gempa GmbH.
- Earth & Environment
- earthquake
- seismology
- + 1
Sensor Management System
The Sensor Management System (SMS) allows the comprehensive acquisition, administration and export of meta data of platforms, sensors and measurement configurations by stations and campaigns operated in the Helmholtz research field Earth & Environment.
- catalogue
- data managment
- Earth & Environment
- + 4
- Python
- Vue
- TypeScript
- + 2