All software
Yeast mRNA tracking: NE segmentation, MLE fitting and particle tracking code and data
Yeast mRNA tracking: NE segmentation, MLE fitting and particle tracking code and data
- MLE
- mRNA tracking
- nuclear envelope
- + 3
- (Markdown)
- (Other)
- (Python)
- + 2
ABBYY FineReader PDF
FineReader PDF empowers professionals to maximize efficiency in the digital workplace. Featuring ABBYY’s latest AI-based OCR technology, FineReader PDF makes it easier to digitize, retrieve, edit, protect, share, and collaborate on all kinds of documents in the same workflow.
- OCR
- transcribing
Abinit
Abinit is a software package based on density functional theory for calculating the properties of solids.
- (C)
- (C++)
- (CMake)
- + 15
addFeatures
addFeatures adds spot images to a SCiLS Lab dataset from a list of defined mass spectral features.
- Image processing
- mass spectrometry
- (R)
admtools
Estimate age-depth models in geology and use them to transform various types of data (fossil ages, phylogenetic trees, trait evolution of lineages) between the time domain and the stratigraphic domain.
- Age-depth modeling
- Geochronology
- Sedimentology
- + 1
- (R)
AI4HPC
AI4HPC, part of CoE RAISE, is an open-source library to train AI models with CFD datasets on HPC systems. AI4HPC also includes a benchmarking suite to test the limits of any system with CPUs and GPUs towards Exascale and a HyperParameter Optimization (HPO) suite for scalable HPO tasks.
- Artificial Intelligence
- Computational Fluid Dynamics
- CPU
- + 4
Aiida-CHAMP
The aiida-champ plugin to handle the CHAMP workflow using AiiDA.
- python
- workflow
- (Python)
- (Shell)
aiproteomics
Generate and compare deep learning models for generating synthetic mass spectral libraries
- Machine learning
- mass spectrometry
- phosphoproteomics
- + 1
- ("Jupyter Notebook")
- (Python)
- (Shell)
Alice2Modelica
This tool allows for the automated generation and calibration of white-box modelica room models based on a room description in the mini-language Modelica.
- Energy
- ESD
- ESD - Topic 2
- + 3
- Python
Alise
The Account LInking SErvice (ALISE) is a tool to link accounts at a service. The goal is to enable federated services at sites that do not yet support federated identities.
- AAI
- Helmholtz AAI
- hpc
- + 3
- Python
- HTML
- Makefile
Allelic Variation Explorer
If you are studying how single nucleotide polymorphisms are clustered in genomic samples, then the Allelic Variation Explorer can help you visualize them.
- Visualization
- (AngelScript)
- (Dockerfile)
- (Python)
Alpaca
Alpaca (Automated Lightweight Provenance Capture) captures the provenance during the execution of Python scripts that process data and stores the information using a data model based on the the W3C PROV standard.
- FAIR Data
- Information
- metadata
- + 3
- Python