All software
Allelic Variation Explorer
If you are studying how single nucleotide polymorphisms are clustered in genomic samples, then the Allelic Variation Explorer can help you visualize them.
- Visualization
- (AngelScript)
- (Dockerfile)
- (Python)
Alpaca
Alpaca (Automated Lightweight Provenance Capture) captures the provenance during the execution of Python scripts that process data and stores the information using a data model based on the the W3C PROV standard.
- FAIR Data
- Information
- metadata
- + 3
- Python
MPI-AMRVAC
MPI-AMRVAC is a parallel adaptive mesh refinement framework aimed at solving (primarily hyperbolic) partial differential equations by a number of different numerical schemes. The emphasis is on (near) conservation laws and on shock-dominated problems in particular.
- (Fortran)
- (Makefile)
- (Perl)
- + 2
anndata
anndata is a Python package for handling annotated data matrices in memory and on disk, positioned between pandas and xarray. anndata offers a broad range of computationally efficient features including, among others, sparse data support, lazy operations, and a PyTorch interface.
- bioinformatics
- data managment
- FAIR Data
- + 1
- Python
Annotation Studio 4
Annotation Studio supports and connects collaborative annotation, source-based composition, and in-depth review in a flexible, web-based environment.
- annotation-tool
- sharing
- JavaScript
- SCSS
- CSS
Annotorious
OpenSeadragon is a JavaScript library that allows users to annotate images. It is available also as OpenSeadragon plugin.
- annotation
- annotation-tool
- data-annotation-tool
- + 3
- TypeScript
- Svelte
- HTML
- + 2
ANNUBeS
ANNUBeS is a deep learning framework meant to generate synthetic data and train on them neural networks aimed at developing and evaluating animals' training protocols in neuroscience.
- neural networks
- Neuroscience
- (Python)
Annular
Annular is a setup for running coupled energy system models with the aim of modeling flexibility scheduling and the policy regulations that affect the behavior of flexibility providers.
- ("Jupyter Notebook")
- (Python)
Ansible Collection - hifis.toolkit
This collection provides production-ready Ansible roles used for providing services used in research and by research software engineers, but not exclusively. The collection is used to deploy popular Helmholtz Cloud services like the Helmholtz Codebase and its CI infrastructure.
- Jinja
Apatosaurus
Apatosaurus is a web app for creating, editing, visualizing, and analyzing a digital critical apparatus.
- htmx
- Textual Criticism
- TypeScript
- Svelte
- Python
- + 4
Apparatus Explorer
A a web application for visualizing, editing and publishing the XML output of ITSEE’s Collation Editor so that it appears as an ECM-styled digital critical apparatus with the addition of a graph that visualizes any encoded genealogical relationships.
- Textual Criticism
AQUILIGN
AQUILIGN is a multilingual alignment and collation engine designed for historical and philological corpora.
- alignment
- Collation
- digital-humanities
- + 5
- Python
- XSLT