All software
SMG2S
SMG2S (Sparse Matrix Generator with Given Spectrum) is able to generate large-scale non-Hermitian and non-Symmetric matrices in parallel with the spectral distribution functions or eigenvalues given by users, and the spectrum of generated matrix is the same as the one specified by the users.
- CPU
- High performance computing
- Matrix Computation
- + 1
- C++
- Python
- CMake
- + 1
swiftmhc
SwiftMHC is a deep learning algorithm for predicting pMHC structure and binding affinity at the same time.
- deep learning
- Protein-Protein Interaction
- Transformer
- ("Jupyter Notebook")
- (Mask)
- (Python)
- + 1
Tigramite
Tigramite is a python package for causal inference with a focus on time series data. It allows to efficiently estimate causal graphs from high-dimensional time series datasets (causal discovery) and to use graphs for the estimation and prediction of direct, total, and mediated effects.
- causal inference
- python
- time series analysis
- Jupyter Notebook
- Python
tortellini
GitHub action to check whether any licensing issues exist for given software.
- (JavaScript)
- (TypeScript)
UQTestFuns
A Python3 library of uncertainty quantification (UQ) test functions
- Benchmark
- python
- Software Testing
- + 1
- Python
- TeX
Viable North Sea (ViNoS): A NetLogo Agent-based Model of German Small-scale Fisheries
A Social-Ecological Systems (SES) model focussing on the adaptive behaviour of fishers facing regulatory, economic, and resource changes.
- Agent-based Model
- Earth&Environment
- FAIR Software
- + 10
VRE-Language
A family of domain-specific languages and supporting tools for scientific computing, materials modeling and data analysis. The VRE Language supports the full data lifecycle of computational models in a user-friendly manner.
- domain-specific language
- high-performance computing
- Interpreter
- + 4
- Python
Pedestrian random walk in NetLogo (ch2.1)
A collection of methods for random walk in NetLogo, including various movement restrictions, biases, and algorithm alternatives.
Place them on the map
Multiple agent placement in specific geographical location. Set up an input number of agents (turtles) at an input location (cell or patch) in an grid holding the input spatial data (map).
Epidemic Network
Experimental environment for testing of large array of theoretical conditions for development epidemic event within various quantitative, spatial and connectedness (network structure) aspects.
Preferential Attachment Network
This NetLogo algorithm simulates network formation using preferential attachment. New nodes are more likely to connect to existing nodes with higher degrees, reflecting a "lottery" system where popular nodes attract more links.
Barter
A simple algorithm of barter with two interexchangeble goods.