All software
pertpy
Pertpy is a Python-based modular framework for the analysis of large-scale single-cell perturbation experiments.
- perturbation
- scverse
- single-cell RNA-seq
- Python
Prospective Monitoring and Management - App (PIA)
PIA is a free open-source eResearch System for monitoring of incident events and provides a digital infrastructure for conducting population-based studies in any research field - at a study centre or at home. PIA focuses on repeated surveys. #DigitalEpidemiology #LongitudinalDataCollection #FOSS
- Data Collection
- Digital Infrastructure
- epidemiology
- + 5
- TypeScript
- HTML
- JavaScript
- + 11
PIQMIe
A web tool for mass spectrometry-based proteomics data analyses
- Data Analysis
- mass spectrometry
- Optimized data handling
- + 2
- (Dockerfile)
- (HTML)
- (JavaScript)
- + 3
shepard
shepard is a multi-database storage system for highly heterogenous experimental research data. Simple connection options via standardized interfaces enable the automated recording of data including an annotation with meta information.
- Aeronautics, Space and Transport
- data managment
- Industry 4.0
- + 1
SimCATS
Simulation of CSDs for Automated Tuning Solutions (SimCATS) is a python framework for simulating charge stability diagrams (CSDs) typically measured during the tuning process of qubits.
- open source
- python
- Quantum Dots
- + 1
- Jupyter Notebook
- Python
sv-channels
Genome-wide detection of structural variants using deep learning
- Machine learning
- ("Jupyter Notebook")
- (Python)
- (R)
- + 1
TIMP
TIMP is an R package for fitting superposition models that implements the partitioned variable projection algorithm. The package has been extensively applied to modeling spectroscopy and Fluorescence Lifetime Imaging Microscopy (FLIM) datasets. It serves as the backend for the Glotaran software.
- global analysis
- target analysis
- time-resolved spectroscopy
- (C)
- (R)
Get fertility rates (females, 5-year cohort)
This NetLogo code snippet provides fertility estimates of females for use in demographic simulations. The figures used are based on two different sources, and will be assigned per 5-year age cohort.
Livestock demography
This submodel simulates livestock herd demography and slaughter effects. Initially part of the ROMFARMS model for animal husbandry on the Dutch Roman frontier, it focused on cattle, sheep, and horses. However, the code is adaptable for various animals, regions, and historical periods.
Artefact of: JavaBIP meets VerCors: Towards the Safety of Concurrent Software Systems in Java
Artefact of: JavaBIP meets VerCors: Towards the Safety of Concurrent Software Systems in Java
- concurrent systems
- Deductive verification
- formal methods
- + 3
AutoEncodersDLSCA
Code underlying the publication: Autoencoder-enabled model portability for reducing hyperparameter tuning efforts in side-channel analysis
- Autoencoders
- Hyperparameter Tuning
- Portability
- + 3
- (Markdown)
- (Other)
- (Python)
Code and test data set underlying the publication: Characterizing single-molecule dynamics of viral RNA-dependent RNA polymerases with a multiplexed magnetic tweezers
Code and test data set underlying the publication: Characterizing single-molecule dynamics of viral RNA-dependent RNA polymerases with a multiplexed magnetic tweezers
- Dwell Time Analysis
- magnetic tweezers
- RdRP activity
- + 1