All software
spiralize
It visualizes data along an Archimedean spiral, makes so-called spiral graph or spiral chart. It has two major advantages for visualization: 1. It is able to visualize data with very long axis with high resolution. 2. It is efficient for time series data to reveal periodic patterns.
- Data analysis
- Data Science
- Data Visualization
- + 3
- R
- JavaScript
- CSS
Texcavator
Texcavator is a search engine and text mining application for creating word cloud and time line visualizations of large text corpora.
- Text analysis & natural language processing
- Visualization
- (CSS)
- (HTML)
- (JavaScript)
- + 1
Microscopy data, code and analysis underlying the publication "Optical STEM detection for scanning electron microscopy"
Microscopy data, code and analysis underlying the publication "Optical STEM detection for scanning electron microscopy"
- Electron Detection
- Instrumentation Development
- Scanning Electron Microscopy
- + 2
- ("Jupyter Notebook")
- (Markdown)
- (Other)
- + 2
ChemSpaX: A Python tool for local chemical space exploration
ChemSpaX is a Python package that can be used for local chemical space exploration of any structure. This is done by placing substuents on a pre-defined skeleton. A substituent can be chosen from an existing library and can be attached to the skeleton.
- catalysis
- Chemistry
- python
- (Python)
- (Shell)
COVID-19 Integrated Surveillance Data in Italy
COVID-19 integrated surveillance data provided by the Italian National Institute of Health and processed via UnrollingAverages.jl to deconvolve the weekly simple moving averages.
- Clinical Data
- Computational Epidemiology
- COVID-19
- + 16
- (Julia)
- (Python)
- (TeX)
Reflectorch
Reflectorch is a Python package for the analysis of X-ray and neutron reflectivity data using Pytorch-based neural networks. It provides fast simulation of reflectometry curves by GPU, parameterization via YAML configuration files, and prior-aware training.
- Machine learning
- neutron
- open source
- + 3
- Python
- TeX
- Dockerfile
simona
This package implements infrastructures for ontology analysis by offering efficient data structures, fast ontology traversal methods, and elegant visualizations. It provides a robust toolbox supporting over 70 methods for semantic similarity analysis.
- Data analysis
- Data Visualization
- FAIR Data
- + 3
- R
- C++
- JavaScript
- + 3
Xenon
If you are using remote machines to do your computations, and don’t feel like learning and implementing many different APIs, Xenon is the tool for you.
- batch-job
- distributed computing
- FTP
- + 11
- (Batchfile)
- (Java)
- (Shell)
Code underlying the publication: "RESTAD: Reconstruction and Similarity Transformer for time series Anomaly Detection"
Code underlying the publication: "RESTAD: Reconstruction and Similarity Transformer for time series Anomaly Detection"
- Anomaly detection
- Radial Basis Function (RBF) kernel
- Time Series
- + 1
- (Markdown)
- (Other)
- (Python)
- + 1
Dataset for Nanowire solar cell above the radiative limit
Dataset for Nanowire solar cell above the radiative limit
- nanowire
- Shockley-Queisser limit
- Solar cell devices
fltk
FLTK toolkit supporting the publication: Aergia: leveraging heterogeneity in federated learning systems
- federated learning
- resource heterogeneity
- Stragglers
- + 1
- (Markdown)
- (Other)
- (Python)
- + 2
Python notebook to generate Figure 3 Panel C from: "Adaptability and evolution of the cell polarization machinery in budding yeast"
Python notebook to generate Figure 3 Panel C from: "Adaptability and evolution of the cell polarization machinery in budding yeast"
- death ratios
- jupyter notebook
- microscopy
- + 1