All software
VarFish
VarFish is a user-friendly web application for the quality control, filtering, prioritization, analysis, and user-based annotation of DNA variant data with a focus on rare disease genetics. It is capable of processing variant call files with single or multiple samples. ...
- Annotation
- Data analysis
- Health
- + 1
- Python
- Vue
- TypeScript
- + 9
NetworKit
NetworKit is a growing open-source toolkit for large-scale network analysis. Its aim is to provide tools for the analysis of large networks in the size range from thousands to billions of edges. It implements efficient graph algorithms, many of them parallel to utilize multicore architectures.
- algorithm engineering
- Graph algorithms
- Network Analysis
- C++
- Cython
- Python
- + 9
Aviator
Aviator is a web service facilitating easy surveillance of scientific online tools. It currently checks more than 13,000 websites twice a day for availability and saves numerous features (response time, RAM usage security certificates, analytic tools / trackers, etc.) in a FAIR data repository.
- Data Visualization
- FAIR Data
- FAIR Software
- + 8
- Python
- HTML
- JavaScript
- + 5
Eclipse Layout Kernel
The Eclipse Layout Kernel (or ELK) is two things: a collection of layout algorithms, and an infrastructure that bridges the gap between layout algorithms and diagram viewers and editors.
- graph drawing
- Layered layout
- OpenSource
- Java
- GAP
- HTML
- + 3
Medical Imaging Interaction Toolkit (MITK)
A free and open-source software for the development of interactive medical image processing applications. MITK provides a powerful and free application called the MITK Workbench, which allows users to view, process, and segment medical images.
- Artificial Intelligence
- C++
- Data Visualization
- + 7
- C++
- CMake
- C
- + 8
elkjs
The JavaScript version of the graph drawing library Eclipse Layout Kernel (ELK).
- graph drawing
- Layered layout
- OpenSource
- JavaScript
- Java
- HTML
- + 1
ILTpy
ILTpy is a python library for performing regularized inversion of one-dimensional or multi-dimensional data without non-negativity constraint. Primary applications include magnetic resonance (NMR, EPR), and electrochemical impedance spectroscopy (distribution of relaxation times; DRT).
- Distribution of Relaxation times
- DRT
- EPR
- + 7
- Python
- HTML
MSS - Mission Support System
For discussion of the possibilites of research flights, the Mission Support System (MSS) was developed. This software helps to review a big amount of metereological and model data by viewing the forecasted parameters of interest along possible regions of a proposed flight path.
- Data Visualization
- Earth & Environment
- Flight Planning
- + 2
- Python
- HTML
- Shell
- + 1
Spin-Dependent 5th Force Limits
This is an open research software and data platform for compiling, standardizing, and visualizing constraints on spin-dependent exotic interactions beyond the Standard Model. It provides a unified, reusable, and citable framework for comparing results across experiments and parameter spaces.
- Beyond Standard Model physics
- Data compilation
- FAIR Software
- + 4
- Jupyter Notebook
- MATLAB
- HTML
- + 2
LiberTEM
LiberTEM is an open source platform for high-throughput distributed processing of large-scale binary data sets and live data streams using a stream-based programming model. The current focus is pixelated scanning transmission electron microscopy (4DSTEM) and scanning electron beam diffraction data.
- 4D STEM
- electron microscopy
- high-throughput
- + 3
- Python
- TypeScript
- JavaScript
- + 6
Representation of Protein Entities (RoPE)
RoPE clusters related protein structures on torsion angles to derive an interpretable, mathematical conformational space of that protein, revealing relevant protein dynamics.
- C++
- Data analysis
- Data Visualization
- + 4
- C++
- C
- GLSL
- + 4
ClimSight
ClimSight is a tool designed to make localized climate information both accessible and actionable. By integrating large language models (LLMs) with geographical and climate data, ClimSight provides users with tailored, location-specific insights essential for a variety of applications.
- Climate
- climate modelling
- ClimSight
- + 1
- Python
- TypeScript
- CSS
- + 3