All software
InstaNovo
InstaNovo is a transformer neural network with the ability to translate fragment ion peaks into the sequence of amino acids that make up the studied peptide(s). InstaNovo+ is a multinomial diffusion model that further improves performance by iterative refinement of predicted sequences.
- deep learning
- Machine learning
- mass spectrometry
- + 1
- (Makefile)
- (Python)
KNIME node archetype
Want to write your own KNIME node Then use the KNIME node archetype to generate a node skeleton repository with sample code.
- Workflow technologies
- (Java)
KNIME GPCRdb nodes
A node for the KNIME workflow systems that allows you to retrieve data about your favorite G protein-coupled receptors from gpcrdb.org.
- Workflow technologies
- (Java)
KNIME node for Kripo
A node for the KNIME workflow systems that allows you to compare different binding sites in proteins with each other.
- Workflow technologies
- (Java)
KNIME Testflow
Allows you to test KNIME nodes automatically using JUnit.
- Workflow technologies
- (Java)
kramersmoyal
The Python package `kramersmoyal` provides functions to analyze stochastic drift-diffusion and discontinuous stochastic processes in observational and experimental data.
- Data analysis
- Drift-Diffusion
- Energy
- + 5
- Python
- TeX
LYNX
LYNX (Lithosphere dYnamics Numerical toolboX) is a novel numerical simulator for modelling thermo-poromechanical coupled processes driving the deformation dynamics of the lithosphere.
- damage rheology and porosity feedback
- Earth & Environment
- Explicit visco-elasto-plastic rheology
- + 1
- C++
- Assembly
- Makefile
- + 4
sv-callers
Highly portable parallel workflow to detect structural variants in cancer genomes.
- Big data
- High performance computing
- Workflow technologies
- (Python)
- (Shell)
KNIME Pharmacophore
A plugin for the KNIME workflow system that adds a Pharmacophore data type and nodes to read, write, and align them.
- Workflow technologies
- (Java)
KNIME PLANTS
A node for the KNIME workflow system that allows you to use the PLANTS protein-ligand docking algorithm.
- Workflow technologies
- (Java)
- (Mustache)
KNIME Python node archetype
Want to write your own KNIME node wrapping a Python library. Then use the KNIME Python node archetype to generate a node skeleton repository with sample code
- Big data
- Workflow technologies
- (Java)
- (Python)
KNIME Python wrapper
If you are developing a KNIME node which calls some Python code, then the KNIME Python wrapper can help you.
- Workflow technologies
- (Java)
- (Python)