All software
NovaCrate
Web-based interactive editor for creating, editing and visualizing research object crates.
- browser
- crate
- edit
- + 14
- TypeScript
- CSS
- JavaScript
- + 1
novoSpaRc
novoSpaRc predicts locations of single cells in space by solely using single-cell RNA sequencing data. An existing reference database of marker genes is not required, but significantly enhances performance if available.
- Data analysis
- open source
- single-cell RNA-seq
- Jupyter Notebook
- HTML
- Python
NPLinker eScience Workshop GenMetMine Materials
These materials were used as a part of the NPLinker eScience Workshop on Natural Product Genome & Metabolome Mining: https://www.wur.nl/en/research-results/chair-groups/plant-sciences/bioinformatics/teaching/nplinker_workshop.htm Most materials are available in a format facilitating its reuse.
- Data mining
- genomics
- Inter-operability & linked data
- + 4
Nexus - Nuclear Elastic X-ray scattering Universal Software
The Nuclear Elastic X-ray scattering Universal Software (Nexus) is a Python package for simulating and fitting of Mossbauer spectra, nuclear resonant scattering (NRS) data, pure electronic X-ray reflectivities (XRR), nuclear X-ray reflectivities, and polarization dependent electronic scattering.
- Mossbauer
- Mossbauer spectroscopy
- Nuclear resonant scattering
- + 1
- C++
- Python
- SWIG
- + 2
Nunaliit
The Nunaliit Atlas Framework aims to make it easy to tell stories and highlight relationships between many different forms of information from a variety of sources, using maps as a central way to connect and interact with the data.
- atlas
- cartography
- database
- + 6
- C
- CSS
- Go Template
- + 10
O2A SEQUENCES
O2A SEQUENCES provides a single platform for the full metabarcoding lifecycle: it keeps samples, metadata, and sequences linked, runs containerized workflows that produce provenance-tracked ASV tables, generates submission-ready exports for public archives, and delivers AI-ready outputs.
- bioinformatics
- Data analysis
- data managment
- + 7
OBiBa Agate
Agate is a web application that offers users related services to the OBiBa software stack.
- authentication
- Epidemiology
- Batchfile
- Fluent
- FreeMarker
- + 8
OBiBa Mica
Mica is OBiBa's software application that is used to create data web portals for large-scale epidemiological studies or multiple-study consortia.
- euCanSHare, software integration
- Batchfile
- CSS
- FreeMarker
- + 7
OBiBa Opal
Opal is OBiBa's core data repository application for epidemiological studies.
- euCanSHare, software integration
- ANTLR
- Batchfile
- HTML
- + 8
Ocean Networks Canada
By bringing data to the surface, ONC provides ocean intelligence to scientists, governments, organizations, and citizens. Ocean data are archived, processed and made freely available via ONC’s data management system, Oceans 3.0.
OCR4all
OCR4all combines open-source solutions to provide a fully automated workflow for automatic text recognition of historical printed and handwritten material. The user can interact with the results to minimize errors and optimize the end result. (Cited from: https://www.ocr4all.org/about/ocr4all)
- Handwritten Text Recognition
- images
- OCR
- Java
- JavaScript
- CSS
- + 1
OCRopus
OCRopus is a collection of neural-network based OCR engines originally developed by Thomas Breuel, with many contributions from students, companies, and researchers. The github.com/ocropus organization collects many of the repositories
- OCR