All software
Overture Data Management System
Overture is a collection of open-source, extendable solutions for big-data genomic science that research institutions and individual researchers can use to support their work.
- authentication
- cloud storage
- genomics
- + 2
- (Dockerfile)
- (Java)
- (Makefile)
- + 1
Overture Ego
A stateless authorization and user management service.
- Data Indexing
- Elasticsearch Automation
- (Dockerfile)
- (Java)
- (Makefile)
- + 1
Overture Maestro
Organizing your distributed data into one index.
- Data Indexing
- Elasticsearch Automation
- (Dockerfile)
- (Groovy)
- (Java)
- + 1
Overture Score
Transfer data quickly and easily to and from any cloud-based storage system.
- Cancer Genomics
- Cloud Storage & Transfer
- (Dockerfile)
- (Java)
- (Makefile)
- + 1
Overture Song
Quickly and reliably track genome metadata scattered across multiple Cloud storage systems.
- Cancer Genomics
- Metadata Management
- Metadata Validation
- (Batchfile)
- (Dockerfile)
- (Go)
- + 7
Oxygen XML Editor
Oxygen XML Editor is a complete XML development and authoring platform with support for all major XML related standards and technologies.
- cross-platform software
- XML
- XML-Editor
- HTML
- JavaScript
- CSS
- + 1
OxyPOM
OxyPOM: a biogeochemical model for Oxygen and Particulate Organic Matter dynamics with detailed temperature sensitivity
- Biogeochemistry
- Hypoxia
- Phytoplankton viral infection
- + 2
- Fortran Free Form
- R
- Shell
- + 2
PACTE
A Collaborative Electronic Text Annotation Platform
- collaborative
- corpus
- disambiguation
- + 5
PanTools-pipeline-v4
General purpose Snakemake pipeline for PanTools v4.
- Data Analysis
- genomics
- pangenomics
- (Dockerfile)
- (Python)
- (Shell)
paradigma
A toolbox to calculate digital biomarkers for wearable sensors in Parkinson's disease.
- (Python)
parareal
This package runs the parareal algorithm on a black-box simulator. Parallelisation is managed through Dask.
- High performance computing
- Numerical analysis
- (CSS)
- (Dhall)
- (HTML)
- + 5
ParFlow
ParFlow is a parallel, integrated hydrology model that simulates spatially distributed surface and subsurface flow.
- Earth System Modelling
- High performance computing
- Hydrology
- + 2
- C
- Tcl
- Python
- + 17