All software
IPOPT
Ipopt (Interior Point OPTimizer, pronounced eye-pea-Opt) is a software package for large-scale nonlinear optimization.
- Software Engineering and Data Infrastructure
- AMPL
- BibTeX Style
- C
- + 12
JuKKR
The Korringa-Kohn-Rostoker (KKR) Greens function method is a highly accurate all-electron method to perform density functional theory calculations for the prediction of materials properties based on quantum mechanical simulations.
- CPU
- Density functional theory
- High performance computing
- + 5
- Fortran Free Form
- Fortran
- TeX
- + 2
Kieker Observability Framework
Kieker is an observability framework, that consists of a monitoring and tracing agent, and compatible analysis tools.
- apm
- distributed-tracing
- dynamic-analysis
- + 5
- Java
- Shell
- CSS
- + 7
libGPML
libGPML is an open-source Java library for working with Graphical Pathway Markup Language (GPML).
- Graphical Pathway Markup Language
- Java
- HTML
- Java
- TeX
LowLevelFEM.jl
An open-source Julia package for concise finite element analysis, combining low-level access with a high-level weak-form DSL for research, education, and multiphysics applications.
- computational mechanics
- computational Multiphysics
- finite element method
- + 8
- GLSL
- Julia
- TeX
MatRad
Matrad is an open source software for radiation treatment planning of intensity-modulated photon, proton, and carbon ion therapy.
- Treatment Planning and dosimetry
- C++
- MATLAB
- TeX
methylKit
methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods and whole genome bisulfite sequencing.
- R
- C++
- TeX
MO|DE.behave
MO|DE.behave is a Python-based software package for the estimation and simulation of discrete choice models and shall enable rapid quantitative analyses based on survey data on choice behavior, utilizing advanced discrete choice methods. Please refer to 'doi.org/10.21105/joss.05265'.
- Python
- TeX
OpenDA
Open data assimilation toolbox. OpenDA is an open interface standard for a set of tools to quickly implement data-assimilation and calibration for arbitrary numerical models.
- Optimized data handling
- Batchfile
- Brainfuck
- C
- + 23
opynsim
Python-Native Musculoskeletal Modelling
- Batchfile
- BitBake
- C
- + 14
parareal
This package runs the parareal algorithm on a black-box simulator. Parallelisation is managed through Dask.
- High performance computing
- Numerical analysis
- CSS
- Dhall
- HTML
- + 5
PeakPerformance
PeakPerformance is a Python toolbox for estimating peak areas from mass-spectrometry or HPLC datasets under uncertainty. It applies Bayesian inference using the PyMC library to parametric models of peak curves.
- Data analysis
- Earth & Environment
- mass spectrometry
- + 4
- Python
- TeX