All software
Mirador
Open-source, web based, multi-window image viewing platform with the ability to zoom, display, compare and annotate images from around the world. IIIF-compliant.
- annotation
- IIIF
- images
- + 1
- JavaScript
- HTML
Monasterium - Collaborative Archive
MOM-CA is a collaborative database system which allows for the research and editing of medieval and early modern charters.
- XML
- JavaScript
- HTML
- XQuery
- + 7
mytoken
Mytoken is a web service to obtain OpenID Connect Access Tokens in an easy but secure way for extended periods of time and across multiple devices. In particular, mytoken was developed to provide OIDC Access Tokens to long-running compute jobs.
- AAI
- Helmholtz AAI
- OIDC
- + 2
- Go
- Svelte
- TypeScript
- + 5
novoSpaRc
novoSpaRc predicts locations of single cells in space by solely using single-cell RNA sequencing data. An existing reference database of marker genes is not required, but significantly enhances performance if available.
- Data analysis
- open source
- single-cell RNA-seq
- Jupyter Notebook
- HTML
- Python
oidc-agent
oidc-agent is an OpenID Connect tool suite designed to simplify authentication processes for command-line applications and workflows that require access to resources protected by OIDC. It provides a secure, but user-friendly way to manage tokens on the command-line.
- AAI
- command-line
- OIDC
- + 2
- C
- C++
- Makefile
- + 4
Omeka Classic
Omeka Classic is a web publishing platform for sharing digital collections. While it was not developed with scholarly digital editions in mind, a community of users has developed plugins that can manage and display digital scholarly editions following the XML-TEI standard.
- digital publishing
- Digital scholarly edition
- TEI
- + 2
- PHP
- CSS
- SCSS
- + 3
Omeka S
Omeka S is a next-generation web publishing platform for institutions interested in connecting digital cultural heritage collections with other resources online.
- PHP
- HTML
- JavaScript
- + 3
Online Transcription Editor (OTE)
Web-based transcription tool
- Transcription
- Transcription Editor
- HTML
- JavaScript
- CSS
- + 2
OpenSeadragon
An open-source, web-based viewer for high-resolution zoomable images, implemented in pure JavaScript, for desktop and mobile.
- IIIF
- images
- JavaScript
- HTML
- TypeScript
- + 1
Oxygen XML Editor
Oxygen XML Editor is a complete XML development and authoring platform with support for all major XML related standards and technologies.
- cross-platform software
- XML
- XML-Editor
- HTML
- JavaScript
- CSS
- + 1
PHYLIP
PHYLIP is a free package of programs for inferring phylogenies. It is distributed as source code, documentation files, and a number of different types of executables.
- phylogeny
- Stemmatology
- C
- Java
- Shell
- + 5
PiGx
PiGx is a collection of genomics pipelines. All pipelines are easily configured with a simple sample sheet and a descriptive settings file. The result is a set of comprehensive, interactive HTML reports with interesting findings about your samples.
- HTML
- Python
- R
- + 7