All software
Alise
The Account LInking SErvice (ALISE) is a tool to link accounts at a service. The goal is to enable federated services at sites that do not yet support federated identities.
- AAI
- Helmholtz AAI
- hpc
- + 3
- Python
- HTML
- Makefile
Allelic Variation Explorer
If you are studying how single nucleotide polymorphisms are clustered in genomic samples, then the Allelic Variation Explorer can help you visualize them.
- Visualization
- Python
- Dockerfile
- AngelScript
Alpaca
Alpaca (Automated Lightweight Provenance Capture) captures the provenance during the execution of Python scripts that process data and stores the information using a data model based on the the W3C PROV standard.
- FAIR Data
- Information
- metadata
- + 3
- Python
MPI-AMRVAC
MPI-AMRVAC is a parallel adaptive mesh refinement framework aimed at solving (primarily hyperbolic) partial differential equations by a number of different numerical schemes. The emphasis is on (near) conservation laws and on shock-dominated problems in particular.
- Fortran
- Python
- Shell
- + 2
anndata
anndata is a Python package for handling annotated data matrices in memory and on disk, positioned between pandas and xarray. anndata offers a broad range of computationally efficient features including, among others, sparse data support, lazy operations, and a PyTorch interface.
- bioinformatics
- data managment
- FAIR Data
- + 1
- Python
ANNUBeS
ANNUBeS is a deep learning framework meant to generate synthetic data and train on them neural networks aimed at developing and evaluating animals' training protocols in neuroscience.
- neural networks
- Neuroscience
- Python
Annular
Annular is a setup for running coupled energy system models with the aim of modeling flexibility scheduling and the policy regulations that affect the behavior of flexibility providers.
- Jupyter Notebook
- Python
Ansible Collection - hifis.toolkit
This collection provides production-ready Ansible roles used for providing services used in research and by research software engineers, but not exclusively. The collection is used to deploy popular Helmholtz Cloud services like the Helmholtz Codebase and its CI infrastructure.
- Jinja
Arbor
Arbor is a high-performance library for computational neuroscience simulations with multi-compartment, morphologically-detailed cells, from single cell models to very large networks. Arbor is written from the ground up to help neuroscientists effectively use contemporary and future HPC systems.
- GPU
- High performance computing
- Neural network
- + 4
- C++
- AGS Script
- Python
- + 7
ArcticConnect
ArcticConnect is a network-enabled platform for realizing geospatial referencing of information about the arctic system derived from research, education, and private sector activities in the arctic and subarctic.
- Arctic
- Polar
- HTML
Arctic Web Map
Arctic Web Map (AWM) is an Arctic-specific web mapping tool allowing researchers to customize map projections for scientifically accurate visualization and analysis, a function that is critical for arctic research but missing in existing web mapping platforms.
- data collection
- python
- wildlife
- Python
- JavaScript
- CSS
- + 1
ARISE biocloud
The Biocloud is the underlying digital back-end infrastructure of the ARISE program.