All software
clumpedr
Clumpedr aims to facilitate analysis of clumped isotope data. It builds on isoreader which is used to import raw data files from the mass spectrometer, and most of the important data processing parts are based on Huntington et al. 2009 and Daëron et al. 2016.
- Data Analysis
- mass spectrometry
- Makefile
- R
- Rez
cobrar
Constraint-based reconstruction and analysis (COBRA) of metabolic networks in R
- Metabolism
- R
- R
- C++
- M4
- + 2
rcrisp
rcrisp provides tools to automate the morphological delineation of riverside urban areas.
- Data Analysis
- geospatial
- R
- + 1
- R
- TeX
CrowdED
CrowdED is a two-staged statistical guideline for optimal crowdsourcing experimental design in order to a-priori estimate optimal workers and tasks' assignment to obtain maximum accuracy on all tasks.
- Citizen Science
- Crowdsourcing
- Data Simulation
- Dockerfile
- Python
- R
cvasl
This library allows exploration and analyses of neuroimaging datsets. The software was developed to allow implementation of multiple large data harmonization and machine learning algorithms over neuroradiology datasets. The core algorithms are implemented in Python.
- Batchfile
- Dockerfile
- Jupyter Notebook
- + 3
CWERNIrevamped
An improved remake of the original CWERNI R- package. This package simulates community wide evolutionary rescue in a neutral community.
- Community ecology
- Community-wide evolutionary rescue
- evolution
- + 3
- R
EEG epilepsy diagnosis
R package developed to extract features from multivariate time series from EEG data and feed them into a random forest classifier.
- Machine learning
- R
- Rebol
ggmice
The {ggmice} package provides visualization tools for incomplete and imputed data in R, compatible with {mice} and {ggplot2}.
- Data Analysis
- R
- Statistics
- + 1
- R
- TeX
grpc4bmi
Run, read and write model state of a numerical simulation written in a variety of languages remotely from Python
- Multi-scale & multi model simulations
- C++
- CMake
- Dockerfile
- + 5
Habitat Sampler
Habitat Sampler (HaSa, Community Version), an innovative tool that autonomously generates representative reference samples for predictive modelling of surface class probabilities.
- autonomous sampling
- Earth & Environment
- image classification
- + 1
- HTML
- R
- Shell
H-gear
This tool analyzes the transmission of political ideas during the American Revolution. It enables users to track shifts in concepts in letter correspondence networks, using semi-supervised topic modeling and temporal social network modeling to reveal ideological shifts and identify key influencers.
- American Revolution
- semi-supervised topic modeling
- social network analysis
- + 2
- Batchfile
- Python
- R
InteractiveVis
The InteractiveVis software framework provides a blueprint for evaluating 3D datasets with convolutional neural networks (CNNs), and for deriving and visualizing CNN relevance maps. This tool was developed and tested for disease detection in MRI scans. We plan to extend it to other domains.
- Data Visualization
- MRI
- open source
- + 1
- Jupyter Notebook
- HTML
- MATLAB
- + 5