All software
Vantage6
An open-source platform for supporting the development of federated learning projects
- federated learning
- healthcare
- privacy preserving analysis
- + 1
- Python
- TypeScript
- HTML
- + 6
dtscalibration
A Python package to load raw Distributed Temperature Sensing (DTS) files, perform a calibration, and plot the result.
- calibration
- DTS
- fiber optic
- + 1
- Python
- Jupyter Notebook
Ersilia Model Hub
The Ersilia Model Hub is an open source platform to serve AI/ML models for infectious disease drug discovery.
- AI
- Chemistry
- Drug discovery
- + 1
- Python
- Jupyter Notebook
- Dockerfile
QMflows
Construction and efficient execution of computational chemistry workflows.
- Multi-scale & multi model simulations
- Workflow technologies
- Python
- Jupyter Notebook
- Shell
UrbEm - Urban Emission downscaling for air quality modeling
UrbEm enables in a modular manner downscaling of gridded regional emissions with specific spatial proxies based on a variety of open access, robust, sustainable and frequently updated sources. UrbEm can be applied to any urban area in Europe and provides methodological homogeneity between cities.
- Air quality
- Chemistry Transport Modeling
- Earth & Environment
- + 2
- Python
- R
CHI2023_DKE
User Interaction Dataset for CHI 2023 paper "Knowing About Knowing: An Illusion of Human Competence Can Hinder Appropriate Reliance on AI Systems."
- Appropriate Reliance
- DunningKruger Effect
- Human-AI Decision Making
- + 1
- Python
- Other
- Markdown
- + 2
NPLinker Web Application
This is the NPLinker web application, developed with Plotly Dash. It enables interactive visualization of NPLinker predictions and is designed to be run locally or in a containerized environment.
- Data mining
- Genome
- Metabolome
- + 2
- Python
- CSS
- Dockerfile
- + 1
PanTools
PanTools is a pangenomic toolkit for comparative analysis of large number of genomes. It is developed in the Bioinformatics Group of Wageningen University, the Netherlands. Please cite the relevant publication(s) from the list of publications if you use PanTools in your research.
- Data Analysis
- Gene classification
- pangenomics
- Java
- Snakemake
- Python
- + 1
mcfly
Helps you find a suitable neural network configuration for deep learning on time series.
- auto-ml
- deep learning
- Machine learning
- + 1
- JavaScript
- Python
- CSS
- + 1
VarFish
VarFish is a user-friendly web application for the quality control, filtering, prioritization, analysis, and user-based annotation of DNA variant data with a focus on rare disease genetics. It is capable of processing variant call files with single or multiple samples. ...
- Annotation
- Data analysis
- Health
- + 1
- Python
- Vue
- TypeScript
- + 9
MEmilio
MEmilio implements various models for infectious disease dynamics, from compartmental to agent-based models. Through efficient implementation and parallelization, MEmilio brings cutting edge and compute intensive models to a large scale, enabling high-resolution spatiotemporal disease dynamics.
- Agent-based Model
- C++
- compartmental model
- + 12
- C++
- Python
- CMake
- + 2
hyphe
A research-driven web-crawler aimed at building, curating and categorizing a corpus of web actors and the network graph of hyperlinks connecting them.
- crawling
- Networks
- python
- + 1
- JavaScript
- Python
- HTML
- + 3