All software
calibr8
calibr8 is a Python toolbox for likelihood-based calibration modeling and Bayesian inference. It supports uni- and multivariate problems, continuous & discrete distributions and includes ready to use models for many non-linear problems. It integrates with PyMC for advanced Bayesian inference.
- Calibration
- Data analysis
- Earth & Environment
- + 4
- Jupyter Notebook
- Python
TetraX
TetraX is a package for finite-element-method (FEM) micromagnetic modeling with the aim of providing user-friendly and versatile micromagnetic workflows. Among other features, it allows to efficiently calculate spin-wave spectra in different magnetic systems of general geometries.
- finite-element-method
- magnetization dynamics
- micromagnetic modeling
- + 4
- Python
- C
- Cython
Oligo Designer Toolsuite
Oligo Designer Toolsuite is a collection of modules that provides all basic functionalities for custom oligo design pipelines as well as advanced experiment-specific functionalities like machine learning models for oligo specificity prediction within a flexible Python framework.
- bioinformatics
- oligonucleotide design
- Probe Design
- + 1
- Python
- Jupyter Notebook
ChASE
ChASE is a modern and scalable library to solve dense Hermitian (Symmetric) algebraic eigenvalue problems based on a spectral polynomial filter. The library is fully parallelized, and is particularly effective for sequences of eigenproblems as they often arise in electronic structure theory.
- C++
- Eigensolver
- GPU
- + 6
- C++
- Cuda
- Fortran
- + 5
Mallob
Automated Reasoning in HPC and Cloud Environments: Scheduling, Solving, Proving
- automated reasoning
- High performance computing
- job scheduling
- + 2
- C++
- Shell
- Python
- + 3
CellRank
CellRank is a computational framework to study cellular fate decisions based on various types of single-cell genomics data. CellRank scales to large cell numbers, is fully compatible with the scverse ecosystem, and is easy to use.
- Data analysis
- fate mapping
- fate prediction
- + 7
- Python
Stable-Baselines3
Stable Baselines3 (SB3) is a set of reliable implementations of reinforcement learning algorithms in PyTorch.
- Machine learning
- robotics
- Python
- Shell
- Makefile
- + 1
perun
perun is a Python package that calculates the energy consumption of Python scripts by sampling usage statistics from hardware interfaces. It can handle MPI applications, gather data from hundreds of nodes, and accumulate it efficiently.
- Earth & Environment
- Energy
- FAIR Software
- + 2
- Python
ClimSight
ClimSight is a tool designed to make localized climate information both accessible and actionable. By integrating large language models (LLMs) with geographical and climate data, ClimSight provides users with tailored, location-specific insights essential for a variety of applications.
- Climate
- climate modelling
- ClimSight
- + 1
- Python
- TypeScript
- CSS
- + 3
LaPy
LaPy is an open-source Python package for differential geometry on triangle and tetrahedra meshes. It includes an FEM solver to estimate the Laplace, Poisson or Heat equations, also the computations of gradients, divergence, mean-curvature flow, conformal mappings, geodesics, ShapeDNA and more.
- computational geometry
- FEM
- Laplace
- + 4
- Python
pySDC
pySDC is a Python implementation of the spectral deferred correction approach and its flavors, esp. the parallel-in-time extension PFASST. It is intended for rapid prototyping and educational purposes. New ideas can be tested and first toy problems can be easily implemented.
- collocation
- high-performance computing
- Information
- + 4
- Python
- Jupyter Notebook
- C++
- + 2
ARTIST
AI-enhanced differentiable Ray Tracer for Irradiation Prediction in Solar Tower Digital Twins
- Concentrated Solar Energy
- Differentiable Ray Tracing
- digital twin
- + 5
- Python
- TeX