All software
mzRecal
mzRecal recalibrates mass spectrometry (MS1) data in mzML format, using peptide identifications in mzIdentML.
- mass spectrometry
- proteomics
- Dockerfile
- Go
- Makefile
- + 2
NPLinker
Microbial natural products data mining by integrating genomics and metabolomics data
- Data processing
- multi-omics integration
- Makefile
- Mustache
- Python
- + 2
OpenPNM
OpenPNM is an open source project aiming to provide porous media researchers with a ready-made framework for performing a wide range of pore network simulations.
- Pore network modeling
- Makefile
- Python
pyGMS
pyGMS: lithosphere-scale rheological analyses of GMS models with Python
- geophysics
- geothermal modeling
- GMS
- + 2
- Python
- Makefile
Rocket
Rocket is a framework for efficient execution of all-pair applications on heterogeneous platforms.
- Big data
- GPU
- High performance computing
- + 1
- C++
- Cuda
- Java
- + 2
SimVascular
The only fully open source software package providing a complete pipeline from medical image data segmentation to patient specific blood flow simulation and analysis.
- Cardiovascular
- Fluid mechanics
- Medical image computing
- + 1
- Batchfile
- C
- C++
- + 9
TaxoTagger
DNA barcode identification, powered by semantic searching.
- Fungi
- Machine learning
- semantic search
- + 3
- Makefile
- Mustache
- Python
Abinit
Abinit is a software package based on density functional theory for calculating the properties of solids.
- C
- C++
- CMake
- + 15
Alise
The Account LInking SErvice (ALISE) is a tool to link accounts at a service. The goal is to enable federated services at sites that do not yet support federated identities.
- AAI
- Helmholtz AAI
- hpc
- + 3
- Python
- HTML
- Makefile
AGILE
AGILE is a GPU-accelerated fork of MPI-AMRVAC, a parallel adaptive mesh refinement framework aimed at solving (primarily hyperbolic) partial differential equations by a number of different numerical schemes. The emphasis is on (near) conservation laws and on shock-dominated problems in particular.
- Fortran
- GPU
- High performance computing
- Fortran
- FPP
- Jupyter Notebook
- + 4
Arpra
Arpra is a C library for analyzing the propagation of numerical error in arbitrary precision IEEE-754 floating-point computations.
- Affine Arithmetic
- Arbitrary Precision
- Interval Arithmetic
- + 2
- C
- M4
- Makefile
asrlitcompare
A tool written in rmarkdown for assessing the level of agreement between two raters following screening in ASReview. Users only need the two .csv files downloaded from ASReview, and the tool will automatically compile a summary report as an HTML file, viewable in your web browser.
- ASReview
- inter-rater reliability
- literature screening
- + 1
- AppleScript
- Awk
- Batchfile
- + 14