All software
methylKit
methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods and whole genome bisulfite sequencing.
- R
- C++
- TeX
Millepede II
Millepede II has been developed to solve the linear least squares problem with a simultaneous fit of all global and local parameters, irrespectively of the number of local parameters.
- Alignment
- Large linear equation system
- Matter
- + 1
- Fortran Free Form
- C
- Python
- + 2
Minion
Minion is an optimization library designed for solving complex optimization problems where gradients are unavailable or unreliable. It implements state-of-the-art evolutionary algorithms which are often missing in standard optimization libraries.
- C++
- optimization
- python
- C++
- Python
- Jupyter Notebook
- + 4
MooViE
MooViE is an easy-to-use tool to display multidimensional data with input-output semantics from all research domains. It supports researcher in studying the mapping of several inputs to several outputs in large multivariate data sets.
- C++
- Data Visualization
- C++
- CMake
- Dockerfile
- + 2
Multiphase Python Repository by HZDR
Toolkit for reproducible multiphase CFD workflows.
- gitlab
- Numerical Simulations
- Post-processing
- + 1
- Python
- Jinja
- Shell
- + 2
NetworKit
NetworKit is a growing open-source toolkit for large-scale network analysis. Its aim is to provide tools for the analysis of large networks in the size range from thousands to billions of edges. It implements efficient graph algorithms, many of them parallel to utilize multicore architectures.
- C++
- Cython
- Python
- + 9
Nexus - Nuclear Elastic X-ray scattering Universal Software
The Nuclear Elastic X-ray scattering Universal Software (Nexus) is a Python package for simulating and fitting of Mossbauer spectra, nuclear resonant scattering (NRS) data, pure electronic X-ray reflectivities (XRR), nuclear X-ray reflectivities, and polarization dependent electronic scattering.
- Mossbauer
- Mossbauer spectroscopy
- Nuclear resonant scattering
- + 1
- C++
- Python
- SWIG
- + 2
oidc-agent
oidc-agent is an OpenID Connect tool suite designed to simplify authentication processes for command-line applications and workflows that require access to resources protected by OIDC. It provides a secure, but user-friendly way to manage tokens on the command-line.
- AAI
- command-line
- OIDC
- + 2
- C
- C++
- Makefile
- + 4
openFuelCell2
openFuelCell2 is a computational fluid dynamics (CFD) toolbox for simulating electrochemical devices such as fuel cells and electrolysis. The solver is based on the open-source library, OpenFOAM®.
- Electrolyzer
- Energy
- Fuel cells
- + 1
- C
- C++
- Python
- + 2
openPMD-api
openPMD is an open meta-data schema that provides meaning and self-description for datasets in science and engineering. This library provides a reference API for openPMD data handling, supporting established I/O backends such as HDF5, ADIOS2, JSON and TOML from serial to MPI-parallel workflows.
- ADIOS
- data
- file-format
- + 8
- C++
- Python
- CMake
- + 5
ParFlow
ParFlow is a parallel, integrated hydrology model that simulates spatially distributed surface and subsurface flow.
- Earth System Modelling
- High performance computing
- Hydrology
- + 2
- C
- Tcl
- Python
- + 17
Peary
This is Peary Caribou, a data acquisition software framework for the Caribou DAQ system. It provides hardware abstraction for periphery components such as voltage regulators and simplifies direct detector configuration and data acquisition through a common interface.
- C++
- CMake
- C
- + 2