All software
Software supporting: RNA-Seq analysis of Brassicaceae species under different irradiances
Software supporting: RNA-Seq analysis of Brassicaceae species under different irradiances
- Brassicaceae
- Hirschfeldia incana
- photosynthesis
- + 1
- Other
- Python
- R
- + 1
source-code-phd-dissertation
Code repository for Ph.D. dissertation "Safer Causal Inference: Theory & Algorithms for Falsification, Trial Augmentation and Policy Evaluation"
- causality
- computer science
- Machine learning
- + 1
- JSON
- Jupyter Notebook
- large-text-file
- + 4
TUD R Cafe Plot-a-thon: 4TU.RD stats
TUD R Cafe Plot-a-thon: 4TU.RD stats
- data visualization
- plot-a-thon
- Statistics
- JSON
- large-text-file
- Markdown
- + 2
addFeatures
addFeatures adds spot images to a SCiLS Lab dataset from a list of defined mass spectral features.
- Image processing
- mass spectrometry
- R
admtools
Estimate age-depth models in geology and use them to transform various types of data (fossil ages, phylogenetic trees, trait evolution of lineages) between the time domain and the stratigraphic domain.
- Age-depth modeling
- Geochronology
- Sedimentology
- + 1
- R
AMPBA-workflow
AMPBA is a modular, Snakemake-based pipeline for reproducible amplicon metabarcoding, composable across markers and study designs, and lightweight enough to run independently on hardware from laptops to HPC clusters.
- Python
- Snakemake
- Shell
- + 2
asrlitcompare
A tool written in rmarkdown for assessing the level of agreement between two raters following screening in ASReview. Users only need the two .csv files downloaded from ASReview, and the tool will automatically compile a summary report as an HTML file, viewable in your web browser.
- ASReview
- inter-rater reliability
- literature screening
- + 1
- AppleScript
- Awk
- Batchfile
- + 14
bibr
bibliography rodent 🦫 - a modern scientific extraction pipeline.
- Jinja
- Jupyter Notebook
- Python
- + 2
BridgeDbR
R package for the BridgeDb Java library making identifier mapping functionality available in the R environment.
- persistent identifiers
- Statistics
- HTML
- R
- TeX
CDS ToolChain
The CDS ToolChain is being developed as part of the INTERPOLAR project of the Medical Informatics Initiative (MII). The CDS ToolChain is typically used in an MII data integration center (DIZ) and processes FHIR resources that comply with the MII Core Data Set (CDS) specification.
- FHIR
- OpenSource
- PLpgSQL
- R
- Shell
- + 2
CIMPredict
CIMPredict delivers an alternative to the FRAX fracture risk calculator for osteoporosis patients based on a new Calcium isotope marker in blood.
- Blue Health Tech
- Data analysis
- Health
- + 2
- Python
- R
clumped-processing
Clumped isotope measurement processing script for Thermo Fisher MAT 253 plus isotope ratio mass spectrometer with the Kiel IV
- clumped isotope
- Data Analysis
- mass spectrometry
- + 3
- HTML
- R