All software
mzRecal
mzRecal recalibrates mass spectrometry (MS1) data in mzML format, using peptide identifications in mzIdentML.
- mass spectrometry
- proteomics
- Dockerfile
- Go
- Makefile
- + 2
OpenMS
OpenMS is an open-source software C++ library for LC-MS data management and analyses. It offers an infrastructure for rapid development of mass spectrometry related software. OpenMS is free software available under the three clause BSD license and runs under Windows, macOS, and Linux.
- C++
- mass spectrometry
- metabolomics
- + 1
- Batchfile
- C
- C++
- + 13
Rankings Reloaded
Rankings Reloaded is an open-source toolkit for robust and accurate benchmark visualization and ranking. It is an out-of-the-box and open-source framework for analyzing and visualizing algorithm results in an accurate way. It uses challengeR and brings advantages of it with user-friendly interface.
- Data analysis
- Data Visualization
- Information
- + 1
- R
scanpy
Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.
- bioinformatics
- Data analysis
- python
- Python
- R
2x2, 3x3 and nxn Space-Filling Curves
Implementation of all possible forms of 2x2 and 3x3 space-filling curves, and nxn curves expanded from any specific level-1 units. It also implements the H-curve and the three-dimensional Hilbert curve.
- Data analysis
- Data Visualization
- open source
- R
- C++
- C
Artifact of Knor: reactive synthesis using Oink
Artifact of Knor: reactive synthesis using Oink
- binary decision diagrams
- parity games
- reactive synthesis
- Automake
- C
- C++
- + 15
Code underlying the publication: Simulating event based pesticide transport with runoff and erosion, OpenLISEM-pesticide v.1
Code underlying the publication: Simulating event based pesticide transport with runoff and erosion, OpenLISEM-pesticide v.1
- environmental fate
- erosion
- modelling
- + 3
- large-text-file
- Markdown
- Other
- + 1
course-introduction-map
Interactive map for engaged learning for large soil and landscape-related courses.
- Education
- introduction lecture
- landscape
- + 1
- large-text-file
- Markdown
- Other
- + 1
impact_study_research
Analysis code supporting: "The impact of Research Data Management training in the short and long term: a mixed-method study using an Open Science lens"
- data stewardship
- FAIR principles
- feedback
- + 6
- Markdown
- Other
- R
Mangrove_CH_AGB_estimation
Data and code underlying the publication: Estimating canopy height and aboveground biomass in tropical mangrove restoration areas through multisource remote sensing
- forest structure
- Indonesia
- Machine learning
- + 5
- Markdown
- Other
- R
rdm101-impact-study
Analysis Code Supporting "RDM 101 Impact Evaluation: A Study on Training Effectiveness and Research Practice Changes"
- data stewardship
- FAIR principles
- feedback
- + 6
- Markdown
- Other
- R
Research compendium for FAIR Sharing is Caring poster
Research compendium for FAIR Sharing is Caring poster
- Data Sharing
- FAIR data
- open science
- + 1
- CSS
- HTML
- JavaScript
- + 4