All software
DataFlow
A comprehensive framework for automated data processing and manual postprocessing, including quality control and flagging. Modular and extensible design allows to create customizable pipelines and monitor their performance throughout the data lifecycle.
- data managment
- Data Visualization
- Pipeline
- + 2
- TSX
- Python
- TypeScript
- + 2
Digital Mappa
An open-source digital humanities platform for open-access workspaces, projects and publications
- annotation
- Virtual Research Environment
- Web Application
- JavaScript
- Ruby
- HTML
- + 4
EcoToxFred
EcoToxFred (ETF) is a digital domain expert that enables simple, natural-language access to complex, integrated ecotoxicological data. It combines knowledge graphs, large language models, and agent-based workflows to support intuitive exploration and analysis of environmental risk information.
- Conversational AI
- Environmental Toxicology
- knowledge graph
- + 2
- Python
- Cypher
- Dockerfile
flexynesis
A deep-learning based multi-omics sequencing data integration suite
- Python
- Scheme
- Dockerfile
FlowStrider
FlowStrider automates data flow-based threat modeling
- threat modeling
- Python
- Dockerfile
FromThePage
FromThePage is a platform for crowdsourcing the transcription, indexing, OCR correction and translation of hand-written documents.
- Transcription
- Ruby
- JavaScript
- Slim
- + 6
FSQC
This package provides quality assurance / quality control scripts for FastSurfer- or FreeSurfer-processed structural MRI data.
- Data analysis
- MRI
- Neuroimaging
- + 2
- Python
- Dockerfile
German Portal for Medical Research Data (FDPG)
The German Portal for Medical Research Data (FDPG) is a central platform enabling researchers to access routine clinical data and biosamples from German university hospitals, supporting secure, standardized, and transparent cross-centre medical research.
- TypeScript
- JavaScript
- Shell
- + 4
ETHOS.HiSim - Household Infrastructure and Building Simulator
ETHOS.HiSim is a Python package for simulation and analysis of household scenarios and building systems using modern components as alternative to fossil fuel based ones. This package integrates load profiles generation of electricity consumption, heating demand, electricity generation.
- ESD
- ESD - Topic 1
- Modeling
- + 2
- Python
- Jupyter Notebook
- TeX
- + 3
INCEpTION
A semantic annotation platform offering intelligent assistance and knowledge management.
- annotation
- annotation-tool
- entity linking
- Java
- Fluent
- Jupyter Notebook
- + 9
InteractiveVis
The InteractiveVis software framework provides a blueprint for evaluating 3D datasets with convolutional neural networks (CNNs), and for deriving and visualizing CNN relevance maps. This tool was developed and tested for disease detection in MRI scans. We plan to extend it to other domains.
- Data Visualization
- MRI
- open source
- + 1
- Jupyter Notebook
- HTML
- MATLAB
- + 5
Junifer
junifer (JUelich NeuroImaging FEature extractoR) is a data handling and feature extraction library targeted towards neuroimaging data.
- FeatureExtraction
- Neuroimaging
- python
- Python
- Shell
- Dockerfile
- + 1