All software
Calopy
A web-based, open-source platform for the analysis of indirect calorimetry data, measuring energy metabolism in animals and humans.
- Data analysis
- Data Visualization
- Health
- + 2
- Python
- Dockerfile
- CSS
case-e
case-e is an open-source electronic case report form (eCRF) system for designing clinical studies and collecting structured research data. It supports configurable forms, validation, role-based access, audit trails, versioning, and portable exports for transparent, FAIR-oriented research workflows.
- BIDS
- Biomedical Ontologies
- Clinical Research
- + 9
- Vue
- Python
- JavaScript
- + 4
CATMA (Computer Assisted Text Markup and Analysis)
CATMA is a practical and intuitive tool for literary scholars, students and other parties with an interest in text analysis and literary research. By helping perform many of the procedures useful for literary analysis that normally have to be carried out entirely manually.
- annotation
- Text Analysis
- Text Markup
- + 1
- Java
- CSS
- SCSS
- + 6
CDS ToolChain
The CDS ToolChain is being developed as part of the INTERPOLAR project of the Medical Informatics Initiative (MII). The CDS ToolChain is typically used in an MII data integration center (DIZ) and processes FHIR resources that comply with the MII Core Data Set (CDS) specification.
- FHIR
- OpenSource
- R
- PLpgSQL
- Shell
- + 2
Computer Vision Experimentation Frameworks - Generalized-YOLOv5
- biomedical image analysis
- Deep Learning
- natural image analysis
- + 4
- Python
- Shell
- Dockerfile
DataFlow
A comprehensive framework for automated data processing and manual postprocessing, including quality control and flagging. Modular and extensible design allows to create customizable pipelines and monitor their performance throughout the data lifecycle.
- data managment
- Data Visualization
- Pipeline
- + 2
- TSX
- Python
- TypeScript
- + 2
Digital Mappa
An open-source digital humanities platform for open-access workspaces, projects and publications
- annotation
- Virtual Research Environment
- Web Application
- JavaScript
- Ruby
- HTML
- + 4
EcoToxFred
EcoToxFred (ETF) is a digital domain expert that enables simple, natural-language access to complex, integrated ecotoxicological data. It combines knowledge graphs, large language models, and agent-based workflows to support intuitive exploration and analysis of environmental risk information.
- Conversational AI
- Environmental Toxicology
- knowledge graph
- + 2
- Python
- Cypher
- Dockerfile
FAIR DO MoMEnT
FDO MoMEnT is a Web app that allows the creation of FAIR Digital Objects (FAIR DO). This is done in a modular way by selecting from a list of templates defining metadata available in the resulting FAIR DO.
- fairdigitalobject
- fairdo
- TypeScript
- HTML
- CSS
- + 2
flexynesis
A deep-learning based multi-omics sequencing data integration suite
- Python
- Scheme
- Dockerfile
FlowStrider
FlowStrider automates data flow-based threat modeling
- threat modeling
- Python
- Dockerfile
FromThePage
FromThePage is a platform for crowdsourcing the transcription, indexing, OCR correction and translation of hand-written documents.
- Transcription
- Ruby
- JavaScript
- Slim
- + 6