All software
nnU-Net
Automatic configuration and training of U-Net-based segmentation pipelines. Works out-of-the-box for a broad range of datasets from all imaging domain! Supports 2D and 3D (multi-channel) images.
- 2D images
- 3D images
- semantic segmentation
- + 1
- Python
- Shell
NOMAD
NOMAD is a web-based research data management software.
- NFDI
- OpenSource
- Research data management
- Python
- JavaScript
- CSS
- + 2
novoSpaRc
novoSpaRc predicts locations of single cells in space by solely using single-cell RNA sequencing data. An existing reference database of marker genes is not required, but significantly enhances performance if available.
- Data analysis
- open source
- single-cell RNA-seq
- Jupyter Notebook
- HTML
- Python
Nexus - Nuclear Elastic X-ray scattering Universal Software
The Nuclear Elastic X-ray scattering Universal Software (Nexus) is a Python package for simulating and fitting of Mossbauer spectra, nuclear resonant scattering (NRS) data, pure electronic X-ray reflectivities (XRR), nuclear X-ray reflectivities, and polarization dependent electronic scattering.
- Mossbauer
- Mossbauer spectroscopy
- Nuclear resonant scattering
- + 1
- C++
- SWIG
- Python
- + 2
Nunaliit
The Nunaliit Atlas Framework aims to make it easy to tell stories and highlight relationships between many different forms of information from a variety of sources, using maps as a central way to connect and interact with the data.
- atlas
- cartography
- database
- + 6
- JavaScript
- Java
- HTML
- + 9
ODM2SMS
A tool to migrate sensor metadata from the observation data model to the Helmholtz Sensor Management System via API.
- Earth & Environment
- metadata
- Research Data Management
- + 1
- Python
- Dockerfile
One button compute
Web application for running a CWL workflow on a bunch of files.
- Optimized data handling
- Workflow technologies
- Python
- HTML
- Common Workflow Language
OpenDA
Open data assimilation toolbox. OpenDA is an open interface standard for a set of tools to quickly implement data-assimilation and calibration for arbitrary numerical models.
- Optimized data handling
- Java
- Fortran
- Python
- + 22
openFuelCell2
openFuelCell2 is a computational fluid dynamics (CFD) toolbox for simulating electrochemical devices such as fuel cells and electrolysis. The solver is based on the open-source library, OpenFOAM®.
- Electrolyzer
- Energy
- Fuel cells
- + 1
- C
- C++
- Python
- + 2
Open Matrices Stimulus Set (omss)
omss is a Python package for generating matrix reasoning puzzles, inspired by Raven's Progressive Matrices. It allows users to generate an unlimited number of customizable puzzles across a range of difficulty levels by setting rules for visual elements.
- Intelligence
- Matrices
- python
- + 1
- Python
openPMD-api
openPMD is an open meta-data schema that provides meaning and self-description for datasets in science and engineering. This library provides a reference API for openPMD data handling, supporting established I/O backends such as HDF5, ADIOS2, JSON and TOML from serial to MPI-parallel workflows.
- ADIOS
- data
- file-format
- + 8
- C++
- Python
- CMake
- + 5
OpenSim Creator
A UI for building OpenSim models
- biomechanical engineering
- opensim
- Simulation
- C++
- CMake
- Python
- + 3