All software
BridgeDb Java
Java library for identifier mapping
- Data
- persistent identifiers
- Java
- Perl
- Shell
- + 5
InteractiveComplexHeatmap
InteractiveComplexHeatmap is an R package that converts static heatmaps produced from ComplexHeatmap package into an interactive Shiny app only with one extra line of code.
- Data analysis
- Data Science
- Data Visualization
- + 3
- R
- JavaScript
- CSS
spec2vec
spec2vec is a novel similarity measure for comparing mass spectrometry data, which learns peak representations using Word2Vec.
- Machine learning
- Text analysis & natural language processing
- Python
- Batchfile
- Makefile
MIRP
MIRP is a python package for quantitative analysis of medical images. It focuses on processing images for integration with radiomics workflows. These workflows either use quantitative features computed using MIRP, or directly use MIRP to process images as input for deep learning models.
- Medical Image Processing
- python
- radiomics
- Python
- Jupyter Notebook
- R
- + 2
snvec
snvec: Pre-computed Precession-Tilt solutions and C code.
- astronomical solution
- Astrophysics
- obliquity
- + 3
- C
svnecR
Easily calculate precession and obliquity from an astronomical solution and assumed or reconstructed values for dynamical ellipticity (Ed) and tidal dissipation (Td). This is a translation and adaptation of the C-code in Zeebe and Lourens (2022), with further details in Zeebe (2022).
- astronomical solution
- cyclostratigraphy
- dynamical ellipticity
- + 12
- R
- Rez
EnrichedHeatmap
Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. The EnrichedHeatmap package provides advanced solutions for normalizing genomic signals within target regions as well as offering highly customizable visualizations.
- Data analysis
- Data Visualization
- FAIR Data
- + 2
- R
- CSS
- C++
JURASSIC
The Juelich Rapid Spectral Simulation Code (JURASSIC) is a fast infrared radiative transfer model for the analysis of atmospheric remote sensing measurements.
- Atmospheric science
- Climate
- Earth & Environment
- + 5
- C
- Shell
- Makefile
- + 1
simplifyEnrichment
A new clustering algorithm, "binary cut", for clustering similarity matrices of functional terms is implemeted in this package. It also provides functions for visualizing, summarizing and comparing the clusterings.
- Data analysis
- Data Visualization
- FAIR Data
- + 3
- R
- CSS
Spex
Spex is a computer code based on many-body perturbation theory and is part of the FLEUR code family. It uses the full-potential linearized augmented plane-wave method (FLAPW), which provides an accurate basis set for all kinds of materials including transition metals, oxides, and f-electron systems.
CoMOLA
CoMOLA is a python tool for optimal spatial allocation of land uses. The tool creates optimal land-use maps for up to four objectives. It takes into account constraints and can be coupled with external models to evaluate different objectives (e.g. ecosystem services/biodiversity models)
- land-use allocation
- multi-objective optimization
- NSGA-II
- Python
- R
OpenChrom
OpenChrom is a vendor independent open source software for chromatography, spectrometry and spectroscopy.
- chromatography
- mass spectrometry
- Java
- HTML
- CSS