All software
BenchmarkRecovery
This project simulates Landsat data and evaluates the performance of recovery indicators with respect to data and disturbance characteristics.
- R
Motus Wildlife Tracking System
The Motus Wildlife Tracking System (Motus) is an international collaborative research network that uses coordinated automated radio telemetry to facilitate research and education on the ecology and conservation of migratory animals.
- conservation science
- movement ecology
- wildlife tracking
- R
mzRecal
mzRecal recalibrates mass spectrometry (MS1) data in mzML format, using peptide identifications in mzIdentML.
- mass spectrometry
- proteomics
- Go
- Shell
- R
- + 2
OpenMS
OpenMS is an open-source software C++ library for LC-MS data management and analyses. It offers an infrastructure for rapid development of mass spectrometry related software. OpenMS is free software available under the three clause BSD license and runs under Windows, macOS, and Linux.
- C++
- mass spectrometry
- metabolomics
- + 1
- C++
- MAXScript
- Cython
- + 15
OpenPNM
OpenPNM is an open source project aiming to provide porous media researchers with a ready-made framework for performing a wide range of pore network simulations.
- Pore network modeling
- C++
- MAXScript
- Cython
- + 15
Rankings Reloaded
Rankings Reloaded is an open-source toolkit for robust and accurate benchmark visualization and ranking. It is an out-of-the-box and open-source framework for analyzing and visualizing algorithm results in an accurate way. It uses challengeR and brings advantages of it with user-friendly interface.
- Data analysis
- Data Visualization
- Information
- + 1
- R
scanpy
Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.
- bioinformatics
- Data analysis
- python
- Python
- R
2x2, 3x3 and nxn Space-Filling Curves
Implementation of all possible forms of 2x2 and 3x3 space-filling curves, and nxn curves expanded from any specific level-1 units. It also implements the H-curve and the three-dimensional Hilbert curve.
- Data analysis
- Data Visualization
- open source
- R
- C++
- C
Artifact of Knor: reactive synthesis using Oink
Artifact of Knor: reactive synthesis using Oink
- binary decision diagrams
- parity games
- reactive synthesis
- Other
- C
- HTML
- + 15
Code underlying the publication: Simulating event based pesticide transport with runoff and erosion, OpenLISEM-pesticide v.1
Code underlying the publication: Simulating event based pesticide transport with runoff and erosion, OpenLISEM-pesticide v.1
- environmental fate
- erosion
- modelling
- + 3
- Other
- R
- Markdown
- + 1
course-introduction-map
Interactive map for engaged learning for large soil and landscape-related courses.
- Education
- introduction lecture
- landscape
- + 1
- Other
- R
- Markdown
- + 1
IntervalMDPAbstractions.jl_ReproducibilityPackage
Data and code underlying the publication: Scalable control synthesis for stochastic systems via structural IMDP abstractions
- embedded systems
- Markov processes
- Stochastic control and optimization
- JSON
- C++
- HTML
- + 10