All software
TIMP
TIMP is an R package for fitting superposition models that implements the partitioned variable projection algorithm. The package has been extensively applied to modeling spectroscopy and Fluorescence Lifetime Imaging Microscopy (FLIM) datasets. It serves as the backend for the Glotaran software.
- global analysis
- target analysis
- time-resolved spectroscopy
- C
- R
microGWAS
microGWAS is a snakemake-powered pipeline to carry out an end-to-end microbial GWAS analysis. Starting from genome assemblies and a phenotype file, microGWAS will run a number of associations using pyseer, annotate the associations results, and generating a number of functional enrichment tests.
- GWAS
- mGWAS
- Pipeline
- + 2
- Python
- Shell
- R
mml_nbh_class_paper
Code underlying the paper "The Spatio-Temporal Evolution of Social Inequalities in Cities: A Multidimensional, Multiscalar and Longitudinal Approach for Neighbourhood Classification"
- Cluster Analysis
- code
- geodemographics
- + 6
- Markdown
- Other
- R
Emma
Emma is a project to create a platform for development of application for Spark and DockerSwarm clusters.
- Big data
- Python
- R
- Scala
- + 1
iReceptor Gateway
A Distributed Data Management System and Scientific Gateway for Mining Next Generation Sequence Data from Immune Responses.
- immunogenomics
- Immunology
- iReceptor
- Blade
- Dockerfile
- HTML
- + 7
eEcology Tracker calendar
Calendar overview with daily statistics of GPS-trackers used to track bird movements.
- Visualization
- CSS
- JavaScript
- Makefile
- + 5
FlexRL
A Flexible Model For Record Linkage
- latent variable model
- partially identifying variables
- record linkage
- + 1
- C++
- HTML
- R
IntervalMDPAbstractions.jl_ReproducibilityPackage
Data and code underlying the publication: Scalable control synthesis for stochastic systems via structural IMDP abstractions
- embedded systems
- Markov processes
- Stochastic control and optimization
- C
- C++
- HTML
- + 10
reference_set_selection_benchmark
Code underlying the publication: "Benchmarking the impact of reference genome selection on taxonomic profiling accuracy"
- Genome Selection
- Lineage Abundance Estimation
- Sequence Clustering
- + 2
- Jupyter Notebook
- Markdown
- Other
- + 3
BenchmarkRecovery
This project simulates Landsat data and evaluates the performance of recovery indicators with respect to data and disturbance characteristics.
- R
KaRRi - Karlsruhe Rapid Ridesharing
KaRRi is a state-of-the-art dispatcher for the dynamic taxi sharing problem with meeting points. KaRRi utilizes highly engineered many-to-many shortest path queries to compute optimal assignments of riders to vehicles and according meeting points within milliseconds.
- algorithm engineering
- algorithms
- Future Mobility
- + 11
- C++
- CMake
- Shell
- + 3
Motus Wildlife Tracking System
The Motus Wildlife Tracking System (Motus) is an international collaborative research network that uses coordinated automated radio telemetry to facilitate research and education on the ecology and conservation of migratory animals.
- conservation science
- movement ecology
- wildlife tracking
- R