All software
MUSCLE3
MUSCLE3 is a coupling library for building multiscale simulations out of single-scale models.
- High performance computing
- Multi-scale & multi model simulations
- C
- C++
- Dockerfile
- + 4
OMUSE
A Python environment to interface and couple oceanographic and other earth system model codes.
- High performance computing
- Multi-scale & multi model simulations
- Batchfile
- C
- C++
- + 10
Representation of Protein Entities (RoPE)
RoPE clusters related protein structures on torsion angles to derive an interpretable, mathematical conformational space of that protein, revealing relevant protein dynamics.
- C++
- Data analysis
- Data Visualization
- + 4
- C++
- C
- GLSL
- + 4
TetraX
TetraX is a package for finite-element-method (FEM) micromagnetic modeling with the aim of providing user-friendly and versatile micromagnetic workflows. Among other features, it allows to efficiently calculate spin-wave spectra in different magnetic systems of general geometries.
- finite-element-method
- magnetization dynamics
- micromagnetic modeling
- + 4
- Python
- C
- Cython
Code to incorporate entrapped air pocket dynamics into SWMM (AirSWMM2.0)
Code to incorporate entrapped air pocket dynamics into SWMM (AirSWMM2.0)
- Air pocket dynamics
- Intermittent water supply
- Pipe-filling events
- + 1
- C
- Markdown
- Other
AirSWMMv1.0
Code to incorporate entrapped air behaviour into SWMM (AirSWMM1.0)
- Air–water interface interaction
- Intermittent water supply
- Stormwater management model (SWMM)
- + 1
- C
- Other
Elephant
Elephant (Electrophysiology Analysis Toolkit) is an open-source, community centered library for the analysis of electrophysiological data in the Python programming language.
- data-analysis
- electrophysiology
- neurophysiology
- + 2
- Python
- C++
- Cuda
- + 1
KaMinPar
Shared-Memory and Distributed-Memory Graph Partitioning
- Data analysis
- Graphs
- High performance computing
- + 3
- C++
- CMake
- Python
- + 4
SUMO
Eclipse SUMO is an open source, highly portable, microscopic and continuous traffic simulation package designed to handle large networks. It allows for intermodal simulation including pedestrians and comes with a large set of tools for scenario creation.
- Aeronautics, Space and Transport
- Modelling
- open source
- + 2
- Python
- C++
- C
- + 14
CUAS-MPI
CUAS-MPI is the MPI-parallel implementation of the confined-unconfined aquifer system model for subglacial hydrology. The model uses a single-layer equivalent porous medium approach and solves a two-dimensional Darcy-type groundwater flow equation.
- C++
- Earth & Environment
- FAIR Software
- + 4
- C++
- CMake
- C
- + 1
simona
This package implements infrastructures for ontology analysis by offering efficient data structures, fast ontology traversal methods, and elegant visualizations. It provides a robust toolbox supporting over 70 methods for semantic similarity analysis.
- Data analysis
- Data Visualization
- FAIR Data
- + 3
- R
- C++
- JavaScript
- + 3
cuBNM
A toolbox for efficient simulation of brain biophysical network models on GPUs
- Biophysical network modeling
- Brain Simulation
- GPU
- + 3
- C
- Python
- C++
- + 4