All software
CorticalSim
Fast simulation of plant cortical microtubules.
- C
- C++
- Makefile
- + 3
InstaNovo
InstaNovo is a transformer neural network with the ability to translate fragment ion peaks into the sequence of amino acids that make up the studied peptide(s). InstaNovo+ is a multinomial diffusion model that further improves performance by iterative refinement of predicted sequences.
- deep learning
- Machine learning
- mass spectrometry
- + 1
- Makefile
- Python
Medical Imaging Interaction Toolkit (MITK)
A free and open-source software for the development of interactive medical image processing applications. MITK provides a powerful and free application called the MITK Workbench, which allows users to view, process, and segment medical images.
- Artificial Intelligence
- C++
- Data Visualization
- + 7
- C++
- CMake
- C
- + 8
Research Software Directory
A content management system for research software, which promotes the visibility, reuse, and impact of research software.
- FAIR
- Research Software Impact
- Software Citation
- CSS
- Dockerfile
- Go
- + 9
LYNX
LYNX (Lithosphere dYnamics Numerical toolboX) is a novel numerical simulator for modelling thermo-poromechanical coupled processes driving the deformation dynamics of the lithosphere.
- damage rheology and porosity feedback
- Earth & Environment
- Explicit visco-elasto-plastic rheology
- + 1
- C++
- Assembly
- Makefile
- + 4
XCASCADE (3D)
XCASCADE (3D) software models electron cascades in solids induced by X-ray impact or by an impact of high-energy electron in non-relativistic energy regime. The code can provide temporal and spatial characteristics of the excited electrons, such as their transient density and energy.
- Electron cascading
- Modeling
- Monte Carlo simulation
- + 3
- Fortran Free Form
- Makefile
- Shell
HyperCanny
Finds edges in high-dimensional data using the Canny algorithm.
- Data Analysis
- edge detection
- High performance computing
- C
- C++
- Makefile
- + 3
Inseq
Interpretability for sequence generation models 🐛 🔍
- deep learning
- Explainable AI
- generative models
- + 2
- Dockerfile
- Makefile
- Python
Syndat Dashboard
A Dashboard for evaluation & visualization of synthetic patient level data.
- data fidelity
- data privacy
- Interactive Dashboard
- + 1
- CSS
- Dockerfile
- HTML
- + 3
MUSCLE3
MUSCLE3 is a coupling library for building multiscale simulations out of single-scale models.
- High performance computing
- Multi-scale & multi model simulations
- C
- C++
- Dockerfile
- + 4
OMUSE
A Python environment to interface and couple oceanographic and other earth system model codes.
- High performance computing
- Multi-scale & multi model simulations
- Batchfile
- C
- C++
- + 10
DoE2Vec
DoE2Vec is a self-supervised approach to learn exploratory landscape analysis features from design of experiments. The model can be used for downstream meta-learning tasks such as learninig which optimizer works best on a given optimization landscape.
- Machine learning
- optimization
- python
- Makefile
- Python
- R