All software
AHN point cloud viewer web service
A web service to serve large point cloud data efficiently using octrees.
- Big data
- Visualization
- Java
- Python
CorC
With CorC, we implemented an IDE to create programs following the Correctness-by-Construction approach. Starting with an abstract specification, CorC supports CbC developers in refining a program by a sequence of refinement steps and in verifying the correctness of these refinements.
- Eclipse
- WebCorC
- Java
- ANTLR
APE
A CLI, Java API and RESTful API for the automated generation of computational pipelines (scientific workflows) from large collections of computational tools.
- Java
- Program synthesis
- Workflow technologies
- ANTLR
- Common Workflow Language
- Java
LinkAhead
Open Source Research Data Management Software
- Data
- Electronic Lab Notebook
- ETL
- + 9
- ANTLR
- C++
- CSS
- + 9
LiSSA
LiSSA: A Framework for Generic Traceability Link Recovery In software development and maintenance, numerous artifacts such as requirements and code are produced. LiSSA aims to provide a generic solution for Traceability Link Recovery (TLR) by utilizing LLMs in combination with RAG techniques.
- Information Retrieval
- Large Language Model (LLM)
- Retrieval Augmented Generation (RAG)
- + 1
- Java
- Python
QTLTableMiner++
Extract gene-trait associations from scientific literature
- Inter-operability & linked data
- Text analysis & natural language processing
- Java
- Shell
FAIR Data Station
A web application for creating, validating and managing research metadata using the ISA framework, turning it into FAIR RDF linked data ready for reuse and submission to public repositories.
- FAIR
- metadata
- Metadata Management
- + 1
- CSS
- HTML
- Java
- + 2
Xenon
If you are using remote machines to do your computations, and don’t feel like learning and implementing many different APIs, Xenon is the tool for you.
- batch-job
- distributed computing
- FTP
- + 11
- Batchfile
- Java
- Shell
Bacting
Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wraps common functionality, providing a toolkit independent, scriptable solution to handle data from the life sciences.
- bioinformatics
- Cheminformatics
- Java
- TeX
Kaapana
Kaapana is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging.
- data managment
- Federated Learning
- Image processing
- + 2
- Python
- Vue
- TypeScript
- + 14
Xenon command line interface
A command line interface for the Xenon library that allows you to use remote machines to do your computations.
- High performance computing
- Batchfile
- Common Workflow Language
- Dockerfile
- + 2
RadPlanBio
RadiationDosePlan- Image/Biomarker-Outcome-platform (RPB) is a collection of open source software systems integrated via portal to deliver a core software infrastructure necessary to support the operation of non-commercial trials unit.
- Clinical-Research
- Health
- Radiotherapy
- + 1
- Java
- HTML
- CSS
- + 1