All software
protein-mosaic-q
Open-source research software for quantifying amino-acid clustering in protein structures, developed alongside simulation-based analyses of structural patterns.
- bioinformatics
- Citizen Science
- proteins
- + 1
- Python
pyGMS
pyGMS: lithosphere-scale rheological analyses of GMS models with Python
- geophysics
- geothermal modeling
- GMS
- + 2
- Python
- Makefile
pyMarAI
Neural network model and PyQt5-based user interface for image segmentation of microscopic tumor spheroids. Usable with nnU-Net deep-learning framework. Trained on microscopic images of mouse pheochromocytoma (MPC) cells. Provides pipelines for handling data, running delineation, curating results...
- Artifical Intelligence
- cancer
- Convolutional Neural Networks
- + 6
- Python
PyPlaque
PyPlaque is an open-source Python package for automated analysis of virus plaque assays. It quantifies plaque morphology, size, and intensity from plate images, integrates with Python data tools, and enables reproducible, customizable workflows for high-throughput infection biology studies.
- Health
- Image processing
- Omics
- + 1
- Jupyter Notebook
- Python
quark
is a software package to support the mapping of combinatorial optimization problems to quantum computing interfaces via QUBO and Ising problems.
- Discrete Optimization
- Ising Problem
- Quantum Annealing
- + 2
- Python
- Shell
quinex
quinex automates the large-scale extraction of quantitative information from text across many domains using lightweight and open language models
- information extraction
- Large Language Model (LLM)
- Measurement Extraction
- + 4
- Python
- TypeScript
- Shell
- + 3
qumia-train-scripts
Scripts and files related to ML training for the QUMIA project
- Machine learning
- Neuromuscular
- ultrasound imaging
- Jupyter Notebook
- Python
- Shell
RAYX
Optical Simulation Software for Synchrotron Radiation
- C++
- open source
- python
- + 4
- C++
- Python
- CSS
- + 8
Review Argumentation at Scale
This package contains a scalable pipeline to perform argument reasoning on a dataset of product reviews, to identify the highest quality ones. By tuning both lossy and lossless parameters, it is possible to tune the pipeline to foster the accuracy of the computation or its speed.
- OpenEdge ABL
- Prolog
- Python
- + 1
ROBIST
Robust Optimization by Iterative Scenario Sampling and Statistical Testing
- optimization
- python
- Python
Rocket
Rocket is a framework for efficient execution of all-pair applications on heterogeneous platforms.
- Big data
- GPU
- High performance computing
- + 1
- C++
- Cuda
- Java
- + 2
rocrate-action-recorder
Python package to record calls of Python CLI commands into a Research Object Crate (RO-Crate). Supports RO-Crate 1.1 specification. Specifically the Process Run Crate profile.
- Inter-operability & linked data
- Workflow technologies
- Python