All software
PIQMIe
A web tool for mass spectrometry-based proteomics data analyses
- Data Analysis
- mass spectrometry
- Optimized data handling
- + 2
- (Dockerfile)
- (HTML)
- (JavaScript)
- + 3
shepard
shepard is a multi-database storage system for highly heterogenous experimental research data. Simple connection options via standardized interfaces enable the automated recording of data including an annotation with meta information.
- Aeronautics, Space and Transport
- data managment
- Industry 4.0
- + 1
sv-channels
Genome-wide detection of structural variants using deep learning
- Machine learning
- ("Jupyter Notebook")
- (Python)
- (R)
- + 1
TIMP
TIMP is an R package for fitting superposition models that implements the partitioned variable projection algorithm. The package has been extensively applied to modeling spectroscopy and Fluorescence Lifetime Imaging Microscopy (FLIM) datasets. It serves as the backend for the Glotaran software.
- global analysis
- target analysis
- time-resolved spectroscopy
- (C)
- (R)
Get fertility rates (females, 5-year cohort)
This NetLogo code snippet provides fertility estimates of females for use in demographic simulations. The figures used are based on two different sources, and will be assigned per 5-year age cohort.
Livestock demography
This submodel simulates livestock herd demography and slaughter effects. Initially part of the ROMFARMS model for animal husbandry on the Dutch Roman frontier, it focused on cattle, sheep, and horses. However, the code is adaptable for various animals, regions, and historical periods.
Artefact of: JavaBIP meets VerCors: Towards the Safety of Concurrent Software Systems in Java
Artefact of: JavaBIP meets VerCors: Towards the Safety of Concurrent Software Systems in Java
- concurrent systems
- Deductive verification
- formal methods
- + 3
AutoEncodersDLSCA
Code underlying the publication: Autoencoder-enabled model portability for reducing hyperparameter tuning efforts in side-channel analysis
- Autoencoders
- Hyperparameter Tuning
- Portability
- + 3
- (Markdown)
- (Other)
- (Python)
Code and test data set underlying the publication: Characterizing single-molecule dynamics of viral RNA-dependent RNA polymerases with a multiplexed magnetic tweezers
Code and test data set underlying the publication: Characterizing single-molecule dynamics of viral RNA-dependent RNA polymerases with a multiplexed magnetic tweezers
- Dwell Time Analysis
- magnetic tweezers
- RdRP activity
- + 1
Code for Detecting Anomalous Misconfigurations in AWS Identity and Access Management Policies
Code for Detecting Anomalous Misconfigurations in AWS Identity and Access Management Policies
- Identity and Access Management
- Misconfiguration Detection
- Security
- (Markdown)
- (Other)
- (Python)
Code for the publication: Vibration-induced friction modulation for a general frequency of excitation
Code for the publication: Vibration-induced friction modulation for a general frequency of excitation
- Average friction
- Mechanical vibration
- Method of direct separation of motion
- + 1
Code to produce the results of the publication: “Disentangling acceleration-, velocity- and duration-dependency of the short- and medium-latency stretch reflexes in the ankle plantarflexors”
Code to produce the results of the publication: “Disentangling acceleration-, velocity- and duration-dependency of the short- and medium-latency stretch reflexes in the ankle plantarflexors”
- Group Ia afferents
- M1-M2 stretch reflex
- Motoneuron pool
- + 1