All software
ICOS data repository
The ICOS Portal app is a FAIR linked data repository for metadata and data. In first instance primarily targeted at hosting the high quality data from ICOS. The repository is optimized for machine to machine communication. Instances in production now for ICOS, Swedish SITES and ICOS Cities networks.
- Data
- Inter-operability & linked data
- metadata
- + 3
- HTML
- Java
- JavaScript
- + 3
I-EMIC
An Implicit Earth system Model of Intermediate Complexity
- ESM
- oceanography
- C
- C++
- CMake
- + 6
imas2xarray
Imas2xarray is a python library for reading IMAS data in hdf5 format into xarray.
- fusion-reactor
- hdf5
- python
- + 1
- Jupyter Notebook
- Python
- Shell
INCEpTION
A semantic annotation platform offering intelligent assistance and knowledge management.
- annotation
- annotation-tool
- entity linking
- Java
- Fluent
- TypeScript
- + 9
InteractiveVis
The InteractiveVis software framework provides a blueprint for evaluating 3D datasets with convolutional neural networks (CNNs), and for deriving and visualizing CNN relevance maps. This tool was developed and tested for disease detection in MRI scans. We plan to extend it to other domains.
- Data Visualization
- MRI
- open source
- + 1
- Jupyter Notebook
- HTML
- MATLAB
- + 5
Internet Archive scraper
The Internet Archive scraper is a workflow for collecting webpages archived in Internet Archive's Wayback Machine. It is designed to run serverless on Amazon's AWS infrastructure.
- AWS
- Internet Archive
- python
- + 2
- HCL
- Python
- Shell
IPOPT
Ipopt (Interior Point OPTimizer, pronounced eye-pea-Opt) is a software package for large-scale nonlinear optimization.
- Software Engineering and Data Infrastructure
- AMPL
- BibTeX Style
- C
- + 12
ITSEE Collation Editor
This is a standalone version of the collation editor. It works with the local file system on your computer. A small example of a single Greek verse is included as a sample file. The collation editor is a GUI wrapper around collateX. A version of that software is included with this editor.
- JavaScript
- Python
- HTML
- + 3
JUBE
JUBE is a generic, lightweight, configurable environment to run, monitor and analyse application execution in a systematic way. This software is commonly used to execute benchmarks and complex workflows on High Performance Computers, but is not limited to these systems.
- Benchmarking
- High performance computing
- HPC
- + 4
- C
- Python
- Shell
JulianA
Accelerates proton radiotherapy research. Flexible, modular toolkit.
- Treatment Planning and dosimetry
- Julia
- Jupyter Notebook
- Shell
Junifer
junifer (JUelich NeuroImaging FEature extractoR) is a data handling and feature extraction library targeted towards neuroimaging data.
- FeatureExtraction
- Neuroimaging
- python
- Python
- Shell
- Dockerfile
- + 1
JupyterDaskOnSLURM
A Dask cluster and a Jupyter server on a SLURM system
- Big data
- High performance computing
- jupyter notebooks
- + 1
- Python
- Shell