All software
hCoCena - horizontal integration and analysis of transcriptomics datasets
hCoCena is an R-package that allows you to comprehensively and easily analyse your transcriptomics data. It also provides the option to integrate several datasets using a network-based integration approach and analyse them jointly. Tutorials and a Docker image exist to help you get to know the tool.
- Data analysis
- Gene Expression
- Health
- + 1
- R
KaMPIng - Karlsruhe MPI next generation
KaMPIng is a flexible and (near) zero-overhead C++ wrapper for MPI, covering the whole range of abstraction levels from low-level MPI calls to convenient STL-style bindings. This allows for both rapid prototyping and highly engineered distributed algorithms.
- C++
- High performance computing
- MPI
- + 1
- C++
- CMake
- Shell
- + 1
LaTeX
LaTeX (gesprochen “Lah-tech” oder “Lay-tech”), ist eine Textsatz*sprache* und ein *Programm* für die Erstellung qualitativ hochwertiger Druckausgaben. Ursprünglich entwickelt für mathematischen Textsatz wird es heute für alle Arten von wissenschaftlichen Texten und auch darüber hinaus eingesetzt.
- Typesetting
Lightning
Lightning: Fast data processing using GPUs on distributed platforms
- Big data
- GPU
- High performance computing
- (C++)
- (Python)
- (Rust)
Minterpy
Minterpy is an open-source Python package for multivariate polynomial interpolation as well as related tasks, like nonlinear polynomial regression, numerical integration, global optimization, level-set methods, and much more.
- Interpolation
- Modeling
- numerical Integration
- Python
mmpxrt
Raytracing code for x-ray spectrometers with (not only) mossaic crystals Helps with design and analysis of x-ray spectrometers. Useful tool for (rather) experienced physicist.
- Python
- CSS
- HTML
- + 2
pkgndep
A new metric named 'dependency heaviness' is proposed that measures the number of additional dependency packages that a parent package brings to its child package and are unique to the dependency packages imported by all other parents.
- Data analysis
- Data Visualization
- FAIR Data
- + 3
- R
- HTML
- JavaScript
- + 1
PSSMGen
Generates consistent PSSM and PDB files for protein-protein complexes
- Big data
- High performance computing
- Optimized data handling
- (Makefile)
- (Python)
PtyLab.m/py/jl
A cross-platform, open-source inverse modeling toolbox for conventional and Fourier ptychography
- computational physics
- Data analysis
- Data Visualization
- + 10
- Jupyter Notebook
- Python
rWikiPathways
Use this package to interface with the WikiPathways API. It provides programmatic access to WikiPathways content in multiple data and image formats, including official monthly release files and convenient GMT read/write functions.
- bioinformatics
- WikiPathways
- (HTML)
- (R)
- (TeX)
TEITOK
TEITOK is a web-based platform for viewing, creating, and editing corpora with both rich textual mark-up and linguistic annotation.
- PHP
- C++
- JavaScript
- + 2
TulipaEnergyModel
This package provides an optimization model for the electricity market and its coupling with other energy sectors. The objective is to determine the optimal investment and operation decisions for different types of assets.
- Energy system analysis
- Energy system modelling
- Integrated energy systems
- + 4
- (Julia)
- (Python)
- (Ruby)
- + 2