All software
Reflectorch
Reflectorch is a Python package for the analysis of X-ray and neutron reflectivity data using Pytorch-based neural networks. It provides fast simulation of reflectometry curves by GPU, parameterization via YAML configuration files, and prior-aware training.
- Machine learning
- neutron
- open source
- + 3
- Python
- TeX
- Dockerfile
Bacting
Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wraps common functionality, providing a toolkit independent, scriptable solution to handle data from the life sciences.
- bioinformatics
- Cheminformatics
- Java
- TeX
pdb2sql
Fast and versatile Python package that leverages SQL queries to parse, manipulate and process biomolecular structure files. The structure files should be in the PDB format and are available on www.rcsb.org.
- Big data
- Optimized data handling
- Python
- TeX
- Makefile
Clustering Geo-data Cubes
Tool to perform cluster analysis of multi-dimensional geospatial data, running on local or distributed systems.
- Big data
- geospatial
- Machine learning
- + 1
- Python
- Jupyter Notebook
- TeX
mmpxrt
Raytracing code for x-ray spectrometers with (not only) mossaic crystals Helps with design and analysis of x-ray spectrometers. Useful tool for (rather) experienced physicist.
- Python
- CSS
- HTML
- + 2
rWikiPathways
Use this package to interface with the WikiPathways API. It provides programmatic access to WikiPathways content in multiple data and image formats, including official monthly release files and convenient GMT read/write functions.
- bioinformatics
- WikiPathways
- HTML
- R
- TeX
TulipaEnergyModel
This package provides an optimization model for the electricity market and its coupling with other energy sectors. The objective is to determine the optimal investment and operation decisions for different types of assets.
- Energy system analysis
- Energy system modelling
- Integrated energy systems
- + 4
- Julia
- TeX
- Ruby
- + 2
Software and data underlying the publication: Faithful Model Explanations through Energy-Constrained Conformal Counterfactuals
Software and data underlying the publication: Faithful Model Explanations through Energy-Constrained Conformal Counterfactuals
- Classification and Regression
- Deep Generative Models & Autoencoders
- Humanities & Computational Social Science
- + 1
- TeX
- Other
- Julia
- + 6
endogenous-macrodynamics-in-algorithmic-recourse
Software and data underlying the publication: Endogenous Macrodynamics in Algorithmic Recourse
- Algorithmic Recourse
- Counterfactual Explanations
- Dynamic Systems
- + 1
- Other
- HTML
- JSON
- + 8
cffconvert
Command line tool to convert CITATION.cff files to various formats used by reference managers such as Zotero and JabRef.
- Python
- TeX
- HTML
- + 1
LUE
LUE is software for storing and manipulating large amounts of information for large numbers of objects. The software is useful, and currently mainly used, in the context of environmental modelling of biological and physical systems, represented by agents and fields.
- Agent-based modeling
- environmental modelling
- field based modelling
- + 6
- C++
- Python
- CMake
- + 6
WEARDA
WEARDA: recording wearable sensor data for human activity monitoring.
- embedded software
- GPS
- Human activity monitoring
- + 4
- C
- TeX