All software
MapReader
MapReader is an end-to-end computer vision (CV) pipeline for exploring and analyzing images at scale.
- computer vision
- digital humanities
- geospatial
- + 4
- Dockerfile
- Python
- Shell
- + 1
Reflectorch
Reflectorch is a Python package for the analysis of X-ray and neutron reflectivity data using Pytorch-based neural networks. It provides fast simulation of reflectometry curves by GPU, parameterization via YAML configuration files, and prior-aware training.
- Machine learning
- neutron
- open source
- + 3
- Python
- TeX
- Dockerfile
COVID-19 Integrated Surveillance Data in Italy
COVID-19 integrated surveillance data provided by the Italian National Institute of Health and processed via UnrollingAverages.jl to deconvolve the weekly simple moving averages.
- Clinical Data
- Computational Epidemiology
- COVID-19
- + 16
- Julia
- Python
- TeX
ENCORE
Enhancing Computational Reproducibility
- Communication and replication
- Computational science
- computer science
- + 2
- HTML
- Python
- TeX
ESM-Tools
ESM-Tools is a toolbox to assist you in running climate and Earth System Model simulations.
- Earth & Environment
- Earth System Modelling
- FAIR Software
- + 11
- Shell
- Python
- Fortran
- + 5
DALES
DALES is a large-eddy simulation code designed for studies of the physics of the atmospheric boundary layer, including convective and stable boundary layers as well as cloudy boundary layers.
- C
- CMake
- Fortran
- + 8
Software and data underlying the publication: Faithful Model Explanations through Energy-Constrained Conformal Counterfactuals
Software and data underlying the publication: Faithful Model Explanations through Energy-Constrained Conformal Counterfactuals
- Classification and Regression
- Deep Generative Models & Autoencoders
- Humanities & Computational Social Science
- + 1
- JavaScript
- JSON
- Julia
- + 6
Bacting
Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wraps common functionality, providing a toolkit independent, scriptable solution to handle data from the life sciences.
- bioinformatics
- Cheminformatics
- Java
- TeX
pdb2sql
Fast and versatile Python package that leverages SQL queries to parse, manipulate and process biomolecular structure files. The structure files should be in the PDB format and are available on www.rcsb.org.
- Big data
- Optimized data handling
- Makefile
- Python
- TeX
Clustering Geo-data Cubes
Tool to perform cluster analysis of multi-dimensional geospatial data, running on local or distributed systems.
- Big data
- geospatial
- Machine learning
- + 1
- Jupyter Notebook
- Python
- TeX
mmpxrt
Raytracing code for x-ray spectrometers with (not only) mossaic crystals Helps with design and analysis of x-ray spectrometers. Useful tool for (rather) experienced physicist.
- Python
- CSS
- HTML
- + 2
rWikiPathways
Use this package to interface with the WikiPathways API. It provides programmatic access to WikiPathways content in multiple data and image formats, including official monthly release files and convenient GMT read/write functions.
- bioinformatics
- WikiPathways
- HTML
- R
- TeX