All software
BridgeDb Java
Java library for identifier mapping
- Data
- persistent identifiers
- Java
- Perl
- Shell
- + 5
JURASSIC
The Juelich Rapid Spectral Simulation Code (JURASSIC) is a fast infrared radiative transfer model for the analysis of atmospheric remote sensing measurements.
- Atmospheric science
- Climate
- Earth & Environment
- + 5
- C
- Shell
- Makefile
- + 1
SAGECal
Fast, memory efficient and GPU accelerated radio interferometric calibration program
- Big data
- GPU
- High performance computing
- C
- C++
- Cuda
- + 5
NNPDF
Fitting proton substructure to observation data using neural networks
- Machine learning
- Python
- Jupyter Notebook
- C
- + 5
GOLEM
GOLEM is a modelling platform for thermal-hydraulic-mechanical and non-reactive chemical processes in fractured and faulted porous media, based on the MOOSE framework
- Earth & Environment
- Multiphysics of porous fractured rocks
- reservoir behaviour and induced seismicity
- + 1
- C++
- SWIG
- Assembly
- + 5
ArrayAnalysis
ArrayAnalysis provides a user-friendly solution for transcriptomic data analysis. It allows researchers, regardless of their bioinformatics expertise, to efficiently analyse, explore, and interpret RNA sequencing and microarray datasets.
- Data Analysis
- data visualization
- microarray
- + 2
- R
- HTML
- Batchfile
- + 2
Materials Learning Algorithms
MALA (Materials Learning Algorithms) is a data-driven framework to accelerate electronic structure calculations based on machine learning. Its purpose is to construct neural-network surrogate models for bypassing computationally expensive steps in state-of-the-art density functional simulations.
- DFT
- machine-learning
- Python
- Fortran
- Shell
- + 1
DeepRank
Deep learning framework for data mining protein-protein interactions using CNN
- Big data
- Machine learning
- Optimized data handling
- Python
- R
- C
- + 2
Paired omics data platform
If you do metabolomics experiments with mass spectra and have sequenced the genomes of the samples, then the platform can help you link them.
- Inter-operability & linked data
- TypeScript
- JavaScript
- HTML
- + 3
TraP: The LOFAR Transients Pipeline
The LOFAR Transients Pipeline (or "TraP") is a Python and SQL based system for detecting and responding to transient and variable sources in a stream of astronomical images.
- Image processing
- radio astronomy
- Source association
- + 3
- Python
- PLpgSQL
- Mako
- + 1
GrainLearning
Unsure about the parameters of your grains in a computer simulation? Use Iterative Bayesian Filtering to learn parameter distributions from limited data. Is your model running slowly? Speed up your simulations with machine-learning surrogates. All these features are integrated within GrainLearning.
- Bayesian Inference
- Data assimilation
- Machine learning
- + 2
- Jupyter Notebook
- Python
- PureBasic
- + 1
XRAYPAC
A software package for modeling x-ray-induced dynamics of matter
- light-matter interaction
- radiation chemistry
- structural imaging
- + 3
- Fortran Free Form
- Python
- C
- + 2