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Logo for Global analysis of DNA methylation in hepatocellular carcinoma via a whole-genome bisulfite sequencing approach
@research-software-directory.org

Global analysis of DNA methylation in hepatocellular carcinoma via a whole-genome bisulfite sequencing approach

Global analysis of DNA methylation in hepatocellular carcinoma via a whole-genome bisulfite sequencing approach

  • DNA methylation analyses
  • prognosis model
  • WGBS (Whole Genome Bisulfite Sequencing)
    1
    10
    Logo for HCOMP2022_ARCHIE
    @research-software-directory.org

    HCOMP2022_ARCHIE

    Analogy-based explanation evaluation dataset for HCOMP 2022 paper "It Is Like Finding a Polar Bear in the Savannah! Concept-level AI Explanations with Analogical Inference from Commonsense Knowledge."

    • Analogy
    • Commonsense Knowledge
    • Concept-level Explanation
    • + 1
    • (Markdown)
    • (Other)
    • (Python)
    5
    10
    Logo for IUI2025_ConvXAI
    @research-software-directory.org

    IUI2025_ConvXAI

    User Interaction Dataset associated with IUI 2025 paper "Is Conversational XAI All You Need? Human-AI Decision Making With a Conversational XAI Assistant"

    • Appropriate Reliance
    • Conversational XAI Interface
    • Human-AI Decision Making
    • ("Jupyter Notebook")
    • (Markdown)
    • (Other)
    • + 1
    3
    10
    Logo for Microscopy data, code and analysis underlying the publication "Optical STEM detection for scanning electron microscopy"
    @research-software-directory.org

    Microscopy data, code and analysis underlying the publication "Optical STEM detection for scanning electron microscopy"

    Microscopy data, code and analysis underlying the publication "Optical STEM detection for scanning electron microscopy"

    • Electron Detection
    • Instrumentation Development
    • Scanning Electron Microscopy
    • + 2
    • ("Jupyter Notebook")
    • (Markdown)
    • (Other)
    • + 2
    6
    10
    Logo for ML-MoCap - Controller and Camera module Images
    @research-software-directory.org

    ML-MoCap - Controller and Camera module Images

    ML-MoCap - Controller and Camera module Images

    • human movement
    • markerless
    • MarkerLess Motion Capture (ML-MoCap)
    • + 1
      1
      10
      Logo for SWMM_GNN_Repository_Paper_version
      @research-software-directory.org

      SWMM_GNN_Repository_Paper_version

      SWMM GNN metamodel – Code for paper: Transferable and Data Efficient Metamodeling of Storm Water System Nodal Depths Using Auto-Regressive Graph Neural Networks

      • GNN
      • Graph neural networks
      • Machine learning
      • + 5
      • ("Jupyter Notebook")
      • (Markdown)
      • (Other)
      • + 2
      4
      10
      Logo for TraViA: a Traffic data Visualization and Annotation tool in Python
      @research-software-directory.org

      TraViA: a Traffic data Visualization and Annotation tool in Python

      TraViA: a Traffic data Visualization and Annotation tool in Python

      • HighD
      • NGSIM
      • pNEUMA
      • + 2
        1
        10
        Logo for Global Benchmark Database (GBD)
        @helmholtz.software

        Global Benchmark Database (GBD)

        GBD is a comprehensive suite of tools for provisioning and sustainably maintaining benchmark instances and their metadata for empirical research on hard algorithmic problem classes.

        • Data analysis
        • FAIR Software
        • Information
        • + 4
        • Python
        • JavaScript
        • HTML
        • + 2
        4
        10
        Logo for ISAAC
        @helmholtz.software

        ISAAC

        In Situ Animation of Accelerated Computations

        • C++
        • CUDA
        • Data Visualization
        • + 4
        • C++
        • HTML
        • JavaScript
        • + 3
        9
        10
        Logo for MDStudio
        @research-software-directory.org

        MDStudio

        A tool to run molecular dynamics workflows.

        • High performance computing
        • Real time data analysis
        • Workflow technologies
        • (CSS)
        • (Dockerfile)
        • (HTML)
        • + 5
        4
        10
        @helmholtz.software

        PeCon.py

        PeCon.py is a Python-Software, that enables the calculation of the ionic and electronic conductivities of Perovskite-type ceramic materials, i.e. the conductivities within oxygen-transport ceramic membranes.

        • Energy
        • MTET
        • open source
        • + 1
          1
          10
          Logo for Reflectorch
          @helmholtz.software

          Reflectorch

          Reflectorch is a Python package for the analysis of X-ray and neutron reflectivity data using Pytorch-based neural networks. It provides fast simulation of reflectometry curves by GPU, parameterization via YAML configuration files, and prior-aware training.

          • Machine learning
          • neutron
          • open source
          • + 3
          • Python
          • TeX
          • Dockerfile
          4
          10