All software
CanDIG CHORD
CHORD is a project to build a federated, Canadian, national data service for privacy- sensitive genomic and related health data. It allows the technologies and services being built by CanDIG and its international partners to be made available to the Canadian health research community more broadly.
- CanDIG
- GA4GH
- genomics
- Lua
- Python
- Shell
case-e
case-e is an open-source electronic case report form (eCRF) system for designing clinical studies and collecting structured research data. It supports configurable forms, validation, role-based access, audit trails, versioning, and portable exports for transparent, FAIR-oriented research workflows.
- BIDS
- Biomedical Ontologies
- Clinical Research
- + 9
- Vue
- Python
- JavaScript
- + 4
CAT
CAT is a collection of tools designed for the construction of various chemical compounds.
- High performance computing
- Python
- Shell
CATMA (Computer Assisted Text Markup and Analysis)
CATMA is a practical and intuitive tool for literary scholars, students and other parties with an interest in text analysis and literary research. By helping perform many of the procedures useful for literary analysis that normally have to be carried out entirely manually.
- annotation
- Text Analysis
- Text Markup
- + 1
- Java
- CSS
- SCSS
- + 6
CDF2Medmij-Mapping-tool
The CDF2Medmij-Mapping-tool facilitates the seamless transformation of cohort data into MedMij-compliant FHIR formats, enabling the harmonization of diverse datasets within a federated learning infrastructure.
- CSS
- HTML
- JavaScript
- + 2
CDS ToolChain
The CDS ToolChain is being developed as part of the INTERPOLAR project of the Medical Informatics Initiative (MII). The CDS ToolChain is typically used in an MII data integration center (DIZ) and processes FHIR resources that comply with the MII Core Data Set (CDS) specification.
- FHIR
- OpenSource
- PLpgSQL
- R
- Shell
- + 2
Ceiba
Ceiba and its command-line interface Ceiba-cli solve the problem of computing, storing, and securely sharing computationally expensive simulation results.
- Optimized data handling
- Dockerfile
- Python
- Shell
- + 1
Cerise
Cerise is a service for running CWL workflows on HPC resources. You add software, tool descriptions, and connection information, then your user runs workflows whenever they want.
- High performance computing
- Optimized data handling
- Workflow technologies
- Common Workflow Language
- Dockerfile
- Makefile
- + 2
CERR
CERR (pronounced 'sir'), stands for Computational Environment for Radiological Research. CERR is MATLAB based software platform for developing and sharing research results using radiation therapy treatment planning and imaging informatics.
- Treatment Planning and dosimetry
- AGS Script
- Batchfile
- C
- + 20
cerulean
A Python 3 library for talking to HPC clusters and supercomputers.
- High performance computing
- SFTP
- SLURM
- + 2
- Dockerfile
- Python
- Shell
CHAMP-EU
The Cornell-Holland Ab-initio Materials Package (CHAMP) is a quantum Monte Carlo suite of programs for electronic structure calculations. The code is developed by Claudia Filippi and Saverio Moroni, with significant contributions by Ravindra Shinde, N. Renaud, V. Azizi, E. Landinez, and S. Shepard.
- Chemistry
- High performance computing
- Physics
- + 1
- Assembly
- Berry
- Brainfuck
- + 14
Chemical Analytics Platform
Chemical Analytics Platform is a freely available Virtual Machine encompassing tools, databases, and KNIME workflows.
- Workflow technologies
- Shell
- Smarty