All software
thesis-code-mia-mkp
Code supporting the BSc thesis: "The Illusion of Ability: The Poisoned Promise of LLM Performance. An Evaluation of the Min-K% Prob membership inference attack."
- large language models
- Machine learning
- membership inference
- + 2
- HTML
- JSON
- large-text-file
- + 4
topological_SB_matching
Code underlying: Topological Schrödinger Bridge Matching
- distribution matching
- generative models
- graph and simplicial complex
- + 1
- Jupyter Notebook
- Markdown
- Other
- + 3
trtpi
Code underlying the publication: Trust-Region Twisted Policy Improvement
- Autonomous Path-Planning
- deep learning
- Markov decision process
- + 2
- Jupyter Notebook
- Markdown
- Other
- + 3
TSMCTS: Code underlying the publication: Twice Sequential Monte Carlo for Tree Search
TSMCTS: Code underlying the publication: Twice Sequential Monte Carlo for Tree Search
- Policy Improvement
- Reinforcement learning
- Search
- + 2
- Markdown
- Other
- Python
- + 2
VeriABI
Software supporting the MSc thesis "Binary Interface Compatibility for Library Integration in C++": VeriABI, a machine-checked ABI compatibility checker
- ABI
- API
- Application Binary Interface
- + 6
- C
- C++
- Markdown
- + 2
Yeast mRNA tracking: NE segmentation, MLE fitting and particle tracking code and data
Yeast mRNA tracking: NE segmentation, MLE fitting and particle tracking code and data
- MLE
- mRNA tracking
- nuclear envelope
- + 3
- Markdown
- Other
- Python
- + 2
Abinit
Abinit is a software package based on density functional theory for calculating the properties of solids.
- C
- C++
- CMake
- + 15
Aiida-CHAMP
The aiida-champ plugin to handle the CHAMP workflow using AiiDA.
- python
- workflow
- Python
- Shell
aiproteomics
Generate and compare deep learning models for generating synthetic mass spectral libraries
- Machine learning
- mass spectrometry
- phosphoproteomics
- + 1
- Jupyter Notebook
- Python
- Shell
AMPBA-workflow
AMPBA is a modular, Snakemake-based pipeline for reproducible amplicon metabarcoding, composable across markers and study designs, and lightweight enough to run independently on hardware from laptops to HPC clusters.
- Python
- Snakemake
- Shell
- + 2
AGILE
AGILE is a GPU-accelerated fork of MPI-AMRVAC, a parallel adaptive mesh refinement framework aimed at solving (primarily hyperbolic) partial differential equations by a number of different numerical schemes. The emphasis is on (near) conservation laws and on shock-dominated problems in particular.
- Fortran
- GPU
- High performance computing
- Fortran
- FPP
- Jupyter Notebook
- + 4
Anatomy Matters
Reproducible analysis code for anatomical tumor–immune archetypes in diffuse large B-cell lymphoma.
- computational pathology
- diffuse large B-cell lymphoma
- jupyter notebooks
- + 4
- Jupyter Notebook
- PowerShell
- Python
- + 1