All software
Metriplane
Open-source Python software for workcell state observation, incident evidence, deterministic record/replay, and reproducible regression testing.
- ArUco
- benchmark evidence
- computer vision
- + 12
- CSS
- Dockerfile
- HTML
- + 3
Mirador
Open-source, web based, multi-window image viewing platform with the ability to zoom, display, compare and annotate images from around the world. IIIF-compliant.
- annotation
- IIIF
- images
- + 1
- JavaScript
- HTML
MITK
Combines ITK and VTK with an application framework. Aims to reduce effort for interactive medical image analysis applications.
- Imaging and Image Processing
- Batchfile
- C
- C++
- + 8
Molstar chat
Chat extension for Mol* protein visualizer
- HTML
- JavaScript
- SCSS
- + 1
Monasterium - Collaborative Archive
MOM-CA is a collaborative database system which allows for the research and editing of medieval and early modern charters.
- XML
- JavaScript
- HTML
- XQuery
- + 7
mri_distortion_toolkit
A toolkit to correct geometric distortion in MR images. Includes tools for converting DICOM to NIfTI, and generating distortion correction maps.
- Imaging and Image Processing
- Batchfile
- CSS
- HTML
- + 3
mytoken
Mytoken is a web service to obtain OpenID Connect Access Tokens in an easy but secure way for extended periods of time and across multiple devices. In particular, mytoken was developed to provide OIDC Access Tokens to long-running compute jobs.
- AAI
- Helmholtz AAI
- OIDC
- + 2
- Go
- Svelte
- TypeScript
- + 5
novoSpaRc
novoSpaRc predicts locations of single cells in space by solely using single-cell RNA sequencing data. An existing reference database of marker genes is not required, but significantly enhances performance if available.
- Data analysis
- open source
- single-cell RNA-seq
- Jupyter Notebook
- HTML
- Python
Nunaliit
The Nunaliit Atlas Framework aims to make it easy to tell stories and highlight relationships between many different forms of information from a variety of sources, using maps as a central way to connect and interact with the data.
- atlas
- cartography
- database
- + 6
- C
- CSS
- Go Template
- + 10
OBiBa Agate
Agate is a web application that offers users related services to the OBiBa software stack.
- authentication
- Epidemiology
- Batchfile
- Fluent
- FreeMarker
- + 8
OBiBa Mica
Mica is OBiBa's software application that is used to create data web portals for large-scale epidemiological studies or multiple-study consortia.
- euCanSHare, software integration
- Batchfile
- CSS
- FreeMarker
- + 7
OBiBa Opal
Opal is OBiBa's core data repository application for epidemiological studies.
- euCanSHare, software integration
- ANTLR
- Batchfile
- HTML
- + 8