All software
NEST
NEST is a simulator for spiking neuronal networks. A well tested and efficient tool, NEST works on your laptop and also on the world’s largest supercomputers to study behaviour of large networks of neurons.
- Computational neuroscience
- exascale
- Modeling
- + 3
- C++
- Python
- CMake
- + 3
DataLad
DataLad is a tool for the joint management of code, data, and their relationship, built on top of the version control systems Git & git-annex. It adapts principles of open-source software development & distribution to address challenges of data management, data sharing, & digital provenance capture.
- DataLad
- data managment
- data sharing
- + 8
- Python
- Shell
- Makefile
- + 4
PeTrack
PeTrack (Pedestrian Tracking) automatically extracts accurate pedestrian trajectories from video recordings (calibration, recognition, tracking). Individual codes enable personalized trajectories with static information of each participant. With a stereo camera also markerless tracking is possible.
- Annotation
- Calibration
- Computer Vision
- + 17
- C++
- Python
- CMake
- + 2
PDAF
PDAF - the Parallel Data Assimilation Framework is one of the most widely used a software frameworks for data assimilation. PDAF provides support for ensemble modeling and fully implemented data assimilation methods to merge models and observational data which let models learn from observations.
- Atmospheric science
- data assimilation
- Earth & Environment
- + 9
- Fortran
- Makefile
- Python
- + 3
XRAYPAC
A software package for modeling x-ray-induced dynamics of matter
- light-matter interaction
- radiation chemistry
- structural imaging
- + 3
- Fortran Free Form
- Python
- C
- + 2
CrystFEL
CrystFEL is a suite of programs to process data from "serial crystallography" experiments.
- crystallography
- Matter
- structural biology
- + 2
- C
- Julia
- Python
- + 2
CPlantBox
CPlantBox is a functional-structural plant-soil modelling framework. It simulated the 3D architecture of a plant, coupled carbon and water flow within the plant, water flow and solute transport in a 3D dynamic soil, as well as water and nutrient uptake, and rhizodeposition.
- C++
- FSPM
- functional-structural soil-plant model
- + 2
- Python
- C++
- CMake
- + 3
CADET
CADET provides hierarchical models, efficient solvers and computational engineering tools for a range of biotechnological processes, including chromatography, filtration, crystallization, and fermentation.
- adsorption
- chromatography
- compartment modelling
- + 4
- C++
- CMake
- C
- + 5
Earth System Model Evaluation Tool (ESMValTool)
- climate modelling
- Data analysis
- Earth & Environment
- + 4
- Python
- NCL
- R
- + 7
4C Multiphysics
4C is a parallel multiphysics research code for simulating solid/fluid mechanics, scalar transport, and chemical reactions. It supports both single-field and coupled systems, offering ready-to-use solutions for a wide range of physical problems.
- Computational Fluid Dynamics
- High performance computing
- Information
- + 3
- C++
- CMake
- Python
- + 5
openCARP
openCARP is a multiscale cardiac electrophysiology simulator for in silico experiments ranging from single heart cells and cardiac tissue to organ models up to the body surface ECG.
- computational cardiology
- digital twin
- electrophysiology
- + 3
- C++
- Python
- C
- + 2
FastSurfer
FastSurfer is a fast and accurate deep-learning pipeline for the analysis of human brain MRI. FastSurfer provides a fully compatible FreeSurfer alternative for volumetric and surface-based thickness analysis, also supporting sub-mm resolutions, and sub-segmentation of neuroanatomical structures.
- Data analysis
- Deep Learning
- Image processing
- + 3
- Python
- Jupyter Notebook
- Shell
- + 1