All software

Materials Learning Algorithms

MALA (Materials Learning Algorithms) is a data-driven framework to accelerate electronic structure calculations based on machine learning. Its purpose is to construct neural-network surrogate models for bypassing computationally expensive steps in state-of-the-art density functional simulations.

CellDetection

An open-source Python package, offering advanced AI methods for the identification and segmentation of biomedical objects, such as cells, in image data. Includes trained models that work out-of-the-box for a wide range of use cases.

SpatialData framework

SpatialData is an open and interoperable data framework for ingesting, representing, processing and visualizing spatial omics datasets.

ESMValCore

JEMRIS

JEMRIS is a versatile, open-source, multi-purpose MRI simulator. It is well-suited for research and education.

ETHOS.GLAES

GLAES is a framework for conducting land eligibility analyses and is designed to easily incorporate disparate geospatial information from a variety of sources into a unified solution.

OCR-D

OCR-D's software is a modular collection developped to create comprehensive processes that typically involve recognition of full texts, letters and words. Techniques such as pre-processing, layout analysis and post-processing are applied. (Quotations from: https://ocr-d.de/en/about.html)

VarFish

VarFish is a user-friendly web application for the quality control, filtering, prioritization, analysis, and user-based annotation of DNA variant data with a focus on rare disease genetics. It is capable of processing variant call files with single or multiple samples. ...

Aviator

Aviator is a web service facilitating easy surveillance of scientific online tools. It currently checks more than 13,000 websites twice a day for availability and saves numerous features (response time, RAM usage security certificates, analytic tools / trackers, etc.) in a FAIR data repository.

FatSegNet

A fully automated deep learning pipeline for adipose tissue (visceral and subcutaneous) segmentation on abdominal Dixon MRI.

ASSUME

An open-source framework for agent-based simulations of European electricity markets, its primary objectives are to ensure usability and customizability for a wide range of users and use cases in the energy system modeling community.

Album

Album is open-source infrastructure for building executable digital libraries of reusable, discoverable, and reproducible scientific software methods.