All software

Materials Learning Algorithms

MALA (Materials Learning Algorithms) is a data-driven framework to accelerate electronic structure calculations based on machine learning. Its purpose is to construct neural-network surrogate models for bypassing computationally expensive steps in state-of-the-art density functional simulations.

CellDetection

An open-source Python package, offering advanced AI methods for the identification and segmentation of biomedical objects, such as cells, in image data. Includes trained models that work out-of-the-box for a wide range of use cases.

SpatialData framework

SpatialData is an open and interoperable data framework for ingesting, representing, processing and visualizing spatial omics datasets.

Multiphase Code Repository by HZDR for OpenFOAM Foundation Software

The Multiphase Code Repository by HZDR provides research code based on OpenFOAM Foundation Software for simulating multiphase flows. Its focus is MultiMorph, an morphology-adaptive Euler-Euler model, supported by validation cases and workflows for robust industrial applications.

ESMValCore

JEMRIS

JEMRIS is a versatile, open-source, multi-purpose MRI simulator. It is well-suited for research and education.

OCR-D

OCR-D's software is a modular collection developped to create comprehensive processes that typically involve recognition of full texts, letters and words. Techniques such as pre-processing, layout analysis and post-processing are applied. (Quotations from: https://ocr-d.de/en/about.html)

VarFish

VarFish is a user-friendly web application for the quality control, filtering, prioritization, analysis, and user-based annotation of DNA variant data with a focus on rare disease genetics. It is capable of processing variant call files with single or multiple samples. ...

Aviator

Aviator is a web service facilitating easy surveillance of scientific online tools. It currently checks more than 13,000 websites twice a day for availability and saves numerous features (response time, RAM usage security certificates, analytic tools / trackers, etc.) in a FAIR data repository.

NetworKit

NetworKit is a growing open-source toolkit for large-scale network analysis. Its aim is to provide tools for the analysis of large networks in the size range from thousands to billions of edges. It implements efficient graph algorithms, many of them parallel to utilize multicore architectures.

ASSUME

An open-source framework for agent-based simulations of European electricity markets, its primary objectives are to ensure usability and customizability for a wide range of users and use cases in the energy system modeling community.

FatSegNet

A fully automated deep learning pipeline for adipose tissue (visceral and subcutaneous) segmentation on abdominal Dixon MRI.