All software
EnrichedHeatmap
Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. The EnrichedHeatmap package provides advanced solutions for normalizing genomic signals within target regions as well as offering highly customizable visualizations.
- Data analysis
- Data Visualization
- FAIR Data
- + 2
- R
- CSS
- C++
NetworKit
NetworKit is a growing open-source toolkit for large-scale network analysis. Its aim is to provide tools for the analysis of large networks in the size range from thousands to billions of edges. It implements efficient graph algorithms, many of them parallel to utilize multicore architectures.
- algorithm engineering
- Graph algorithms
- Network Analysis
- C++
- Cython
- Python
- + 9
BridgeDb Java
Java library for identifier mapping
- Data
- persistent identifiers
- Batchfile
- CSS
- HTML
- + 5
OpenChrom
OpenChrom is a vendor independent open source software for chromatography, spectrometry and spectroscopy.
- chromatography
- mass spectrometry
- CSS
- HTML
- Java
- + 1
NNPDF
Fitting proton substructure to observation data using neural networks
- Machine learning
- C
- CSS
- HTML
- + 5
Chemotion ELN
Chemotion ELN is an Open Source electronic lab notebook (ELN) for scientists working in chemistry and neighboring disciplines, developed mainly at Karlsruhe Institute of Technology (KIT). The web-based application allows the acquisition, management, storage, processing, and sharing of research data.
- Chemistry
- Electronic Lab Notebook
- Experimental Sciences
- + 2
- JavaScript
- Ruby
- SCSS
- + 5
Code and data underlying the publication: City3D: Large-scale Building Reconstruction from Airborne LiDAR Point Clouds
Code and data underlying the publication: City3D: Large-scale Building Reconstruction from Airborne LiDAR Point Clouds
- Building
- Point Cloud
- Surface-reconstruction
- + 1
- Automake
- C
- C++
- + 8
dataquieR
dataquieR is an R package designed to conduct automated and standardized data quality assessments. It can be applied to all sorts of tabular data. Spreadsheet-type metadata can be used to specify descriptions, expectations, and requirements about the data.
- Cohort studies
- data quality
- data quality assessment
- + 11
- R
- JavaScript
- CSS
- + 1
Scholia
Graphical User Interface around Wikidata that uses SPARQL to collect data
- Wikidata
- CSS
- Dockerfile
- HTML
- + 3
Paired omics data platform
If you do metabolomics experiments with mass spectra and have sequenced the genomes of the samples, then the platform can help you link them.
- Inter-operability & linked data
- CSS
- Dockerfile
- HTML
- + 3
MAGMa
MAGMa is an online application for the automatic chemical annotation of mass spectrometry data.
- Big data
- Visualization
- CSS
- Cython
- Dockerfile
- + 5
grlc
Builds a web API from SPARQL queries hosted on GitHub to accessing triple store data.
- garlic
- Inter-operability & linked data
- CSS
- Dockerfile
- HTML
- + 4