All software
matRad
matRad is a dose calculation and inverse treatment planning toolkit for radiotherapy research and education written in Matlab.
- Health
- Medical Physics
- Particle Therapy
- + 2
- MATLAB
- TeX
- C++
4C Multiphysics
4C is a parallel multiphysics research code for simulating solid/fluid mechanics, scalar transport, and chemical reactions. It supports both single-field and coupled systems, offering ready-to-use solutions for a wide range of physical problems.
- Computational Fluid Dynamics
- High performance computing
- Information
- + 3
- C++
- CMake
- Python
- + 5
openCARP
openCARP is a multiscale cardiac electrophysiology simulator for in silico experiments ranging from single heart cells and cardiac tissue to organ models up to the body surface ECG.
- computational cardiology
- digital twin
- electrophysiology
- + 3
- C++
- Python
- C
- + 2
EnrichedHeatmap
Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. The EnrichedHeatmap package provides advanced solutions for normalizing genomic signals within target regions as well as offering highly customizable visualizations.
- Data analysis
- Data Visualization
- FAIR Data
- + 2
- R
- CSS
- C++
GOLEM
GOLEM is a modelling platform for thermal-hydraulic-mechanical and non-reactive chemical processes in fractured and faulted porous media, based on the MOOSE framework
- Earth & Environment
- Multiphysics of porous fractured rocks
- reservoir behaviour and induced seismicity
- + 1
- C++
- SWIG
- Assembly
- + 5
Allpix Squared
Allpix Squared is a semiconductor detector simulation framework. The goal of the framework is to provide a complete and easy-to-use package for end-to-end simulations of semiconductor detector performance from incident ionizing radiation until the digitization of hits in the detector chip.
- Drift-Diffusion
- Geant4
- Monte Carlo
- + 5
- C++
- CMake
- C
- + 2
rGREAT
GREAT is a type of functional enrichment analysis directly performed on genomic regions. This package implements the GREAT algorithm, also it supports directly interacting with the GREAT web service (the online GREAT analysis). Both analysis can be viewed by a Shiny application.
- Data analysis
- Data Visualization
- FAIR Data
- + 3
- R
- C++
BornAgain
Software to simulate and fit neutron and x-ray reflectometry and grazing-incidence small-angle scattering. The latter is computed as usual, using the distorted-wave Born approximation, hence the name. Users can set up arbitrary multilayer samples with interface roughness and embedded nanoparticles.
- Data analysis
- Modelling
- Photon and neutron science
- + 1
- C++
- Python
- CMake
- + 2
alpaka
The alpaka library is a header-only C++17 abstraction framework designed for computing accelerator development. It enables developers to implement algorithms once and execute them across a range of platforms, including x86, ARM, and RISC-V CPUs, as well as accelerators from NVIDIA, AMD, and Intel.
- C++
- CPU
- CUDA
- + 7
- C++
- CMake
- Shell
- + 1
Ginkgo
Ginkgo is a high-performance math library for the solution of sparse linear systems on GPUs (AMD, Intel, NVIDIA). Ginkgo is implemented using modern C++ and provides preconditioned Krylov solvers, multigrid, sparse direct solvers, mixed precision, and batched functionality.
- GPU
- High performance computing
- Large linear equation system
- + 4
- C++
- CMake
- Cuda
- + 4
JEMRIS
JEMRIS is a versatile, open-source, multi-purpose MRI simulator. It is well-suited for research and education.
- MRI
- Simulation
- C++
- Python
- MATLAB
- + 5
PEPC
The PEPC project (Pretty Efficient Parallel Coulomb Solver) is a public tree code that has been developed at Jülich Supercomputing Centre since the early 2000s. Our code is a non-recursive version of the Barnes-Hut algorithm, using a level-by-level approach to both tree construction and traversals.
- Barnes-Hut
- High performance computing
- hpc
- + 2
- Fortran Free Form
- C
- Shell
- + 2