All software
DUNE (Distributed and Unified Numerics Environment)
DUNE, the Distributed and Unified Numerics Environment, is a modular toolbox for solving partial differential equations (PDEs) with grid-based methods. It supports the easy, flexible, and efficient implementation of finite element and volume methods. DUNE is C++ code and also has a Python interface.
- C++
- Grid-based PDE methods
- High performance computing
- + 5
- C++
- CMake
- Hack
- + 2
PeTrack
PeTrack (Pedestrian Tracking) automatically extracts accurate pedestrian trajectories from video recordings (calibration, recognition, tracking). Individual codes enable personalized trajectories with static information of each participant. With ML techniques also markerless tracking is possible.
- Annotation
- Calibration
- Computer Vision
- + 20
- C++
- Python
- CMake
- + 2
NEST
NEST is a simulator for spiking neuronal networks. A well tested and efficient tool, NEST works on your laptop and also on the world’s largest supercomputers to study behaviour of large networks of neurons.
- Computational neuroscience
- exascale
- Modeling
- + 3
- C++
- Python
- CMake
- + 3
DuMux
DuMux - DUNE for Multi-{Phase, Component, Scale, Physics, …} flow and transport in porous media and more. The swiss army knife of porous media research. Open-source simulator in modern C++.
- Earth and Environmental Sciences
- Engineering
- Finite volume method
- + 9
- C
- C++
- CMake
- + 2
Score-P
Score-P provides insight into massively parallel HPC applications, their communication, synchronization, I/O, and scaling behaviour to pinpoint performance bottlenecks and their causes.
- hpc
- Information
- instrumentation
- + 5
- C
- Fortran Free Form
- M4Sugar
- + 2
CPlantBox
CPlantBox is a functional-structural plant-soil modelling framework. It simulated the 3D architecture of a plant, coupled carbon and water flow within the plant, water flow and solute transport in a 3D dynamic soil, as well as water and nutrient uptake, and rhizodeposition.
- C++
- FSPM
- functional-structural soil-plant model
- + 2
- Python
- C++
- CMake
- + 4
CADET
CADET provides hierarchical models, efficient solvers and computational engineering tools for a range of biotechnological processes, including chromatography, filtration, crystallization, and fermentation.
- adsorption
- chromatography
- compartment modelling
- + 4
- C++
- CMake
- C
- + 5
AMUSE
Combine existing numerical codes in an easy to use Python framework. With AMUSE you can simulate objects such as star clusters, proto-planetary disks and galaxies.
- High performance computing
- Multi-scale & multi model simulations
- Workflow technologies
- Assembly
- C
- C++
- + 23
matRad
matRad is a dose calculation and inverse treatment planning toolkit for radiotherapy research and education written in Matlab.
- Health
- Medical Physics
- Particle Therapy
- + 2
- MATLAB
- TeX
- C++
openCARP
openCARP is a multiscale cardiac electrophysiology simulator for in silico experiments ranging from single heart cells and cardiac tissue to organ models up to the body surface ECG.
- computational cardiology
- digital twin
- electrophysiology
- + 3
- C++
- Python
- CMake
- + 2
4C Multiphysics
4C is a parallel multiphysics research code for simulating solid/fluid mechanics, scalar transport, and chemical reactions. It supports both single-field and coupled systems, offering ready-to-use solutions for a wide range of physical problems.
- Computational Fluid Dynamics
- High performance computing
- Information
- + 3
- C++
- CMake
- Python
- + 6
EnrichedHeatmap
Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. The EnrichedHeatmap package provides advanced solutions for normalizing genomic signals within target regions as well as offering highly customizable visualizations.
- Data analysis
- Data Visualization
- FAIR Data
- + 2
- R
- CSS
- C++